View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_7 (Length: 528)
Name: NF3606_high_7
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_7 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 87 - 506
Target Start/End: Complemental strand, 8763244 - 8762825
Alignment:
| Q |
87 |
tattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattggaaagtaagtcatct |
186 |
Q |
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| T |
8763244 |
tattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattggaaagtaagtcatct |
8763145 |
T |
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| Q |
187 |
tttaaaaatatttttcttatgaaaggctttttaattctaatcagttttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaa |
286 |
Q |
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| T |
8763144 |
tttaaaaatatttttcttatgaaaggctttttaaatctaattagttttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaa |
8763045 |
T |
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| Q |
287 |
agaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaata |
386 |
Q |
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| T |
8763044 |
agaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctaaatttacatcatatatttcaata |
8762945 |
T |
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| Q |
387 |
atattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgcaa |
486 |
Q |
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| T |
8762944 |
atattataataacatcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcattatcttaactttctcgagtatatcttgcaa |
8762845 |
T |
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| Q |
487 |
actctaatgctttggtatat |
506 |
Q |
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| T |
8762844 |
actctaatgctttggtatat |
8762825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 233 - 506
Target Start/End: Complemental strand, 8789577 - 8789307
Alignment:
| Q |
233 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaa |
332 |
Q |
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| T |
8789577 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaa |
8789478 |
T |
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| Q |
333 |
tgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaataatattataatatcatcattagcagactgaattataatgttgataat |
432 |
Q |
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| T |
8789477 |
tgtagcaggtcacttacaggtttttcttctcaatttacatcatatatttcaataatattataata---tcattagcagactgaatgataatgttgataat |
8789381 |
T |
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| Q |
433 |
ttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgcaaactctaatgctttggtatat |
506 |
Q |
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| T |
8789380 |
ttttctgtctctaatttttgtcgttgtcttaactttctctagtatatcttgcaaactctaatgctttagtatat |
8789307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 8819 - 8918
Alignment:
| Q |
270 |
ttcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaattta |
369 |
Q |
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| T |
8819 |
ttcagatgttgtgccaaagaaaattttggagataatgaatgttccaaacttaacaagagaaaatgtagccagtcatttacaggtttttcttctcaattta |
8918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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