View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_high_9 (Length: 496)

Name: NF3606_high_9
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_high_9
NF3606_high_9
[»] chr5 (11 HSPs)
chr5 (17-483)||(40598241-40598707)
chr5 (38-275)||(40277089-40277326)
chr5 (121-473)||(40333000-40333355)
chr5 (121-473)||(40386278-40386633)
chr5 (38-471)||(40376035-40376471)
chr5 (335-473)||(40283161-40283299)
chr5 (54-184)||(40257607-40257737)
chr5 (160-284)||(40310350-40310474)
chr5 (352-476)||(40276846-40276970)
chr5 (380-473)||(40302840-40302930)
chr5 (381-447)||(40310190-40310256)


Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 40598241 - 40598707
Alignment:
Q  17 tcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatacttaactttctcacccattgcttttgccaacgctgtcttaccagagcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598241 tcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatgcttaactttctcacccattgcttttgccaacgctgtcttaccagagcc 40598340  T
Q  117 cttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598341 cttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatattt 40598440  T
Q  217 cctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598441 cctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaatt 40598540  T
Q  317 cattccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgacctt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598541 cattccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgacctt 40598640  T
Q  417 ttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaatcagcctattc 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598641 ttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaatcagcctattc 40598707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 38 - 275
Target Start/End: Complemental strand, 40277326 - 40277089
Alignment:
Q  38 caaataaaacctcatgaaaaatctttagatacttaactttctcacccattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaat 137  Q
    |||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||  |||| ||||| |||||||| ||||   |||||||||| |||||    
T  40277326 caaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaagccaat 40277227  T
Q  138 catagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaa 237  Q
    |||||| |||| ||||||    | ||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||   ||| ||||||||||||    
T  40277226 catagaacaatcatcatccttgaatgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttccattagaaaagtgctctaaa 40277127  T
Q  238 cttggaattggagttgaaaatggatcaaattcgcattt 275  Q
    ||||||||| ||||||||||||| |||||||| |||||    
T  40277126 cttggaattcgagttgaaaatgggtcaaattcacattt 40277089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 121 - 473
Target Start/End: Complemental strand, 40333355 - 40333000
Alignment:
Q  121 ctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacac---aaaatatttc 217  Q
    ||||| |||||||| |||||| | |||||||||||| |||||||||| |||| || |||||||| ||| ||  | ||||| ||||||   ||| ||||||    
T  40333355 ctaccgtacaatcctatcatacaacaattatcatcttgcagtgcctccaaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttc 40333256  T
Q  218 ctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaattc 317  Q
    || |||||||||| |||||||||||||||| |||||||||||||||||| |  |||||   ||| |  || || ||||||  | |||| ||  |||||||    
T  40333255 ctaaagagaagtgttctaaacttggaattgtagttgaaaatggatcaaaattacatttcttatttagtgctgtaattttttcctgcaacttattaaattc 40333156  T
Q  318 attccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttt 417  Q
    | |||||  | ||  | ||||||||| | | ||||| || |  | |||||||| ||| |||| |||||||||||||||||||||| ||||  | ||||||    
T  40333155 aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgattatgtctgcttcttttagccactcaaacacaacatctctaaccttt 40333056  T
Q  418 tcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 473  Q
    ||||||||  ||||| |||||||||||||| | |||||| |||| |||||||||||    
T  40333055 tcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgatttgaaat 40333000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 121 - 473
Target Start/End: Complemental strand, 40386633 - 40386278
Alignment:
Q  121 ctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacac---aaaatatttc 217  Q
    ||||| |||||||| |||||| | |||||||||||| |||||||||| |||| || |||||||| ||| ||  | ||||| ||||||   ||| ||||||    
T  40386633 ctaccgtacaatcctatcatacaacaattatcatcttgcagtgcctccaaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttc 40386534  T
Q  218 ctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaattc 317  Q
    || |||||||||| |||||||||||||||| |||||||||||| ||||| |  |||||   ||| |  || || ||||||  | |||||||  |||||||    
T  40386533 ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgctgtaattttttcctgcaatttattaaattc 40386434  T
Q  318 attccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttt 417  Q
    | |||||  | ||  | ||||||||| | | ||||| || |  | |||||||| ||| |||| |||||||||||||||||||||| ||||  | ||||||    
T  40386433 aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgactatttctgcttcttttagccactcaaacacaacatctctaaccttt 40386334  T
Q  418 tcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 473  Q
    ||||||||    ||| |||||||||||| | | |||||| |||| |||||||||||    
T  40386333 tcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgatttgaaat 40386278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 471
Target Start/End: Complemental strand, 40376471 - 40376035
Alignment:
Q  38 caaataaaacctcatgaaaaatctttagatacttaactttctcacccattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaat 137  Q
    ||||||||| ||||| |||||| |||| | || | ||||||||||||||| || |  |||| |  || ||||||||| |    ||||| |||||||| ||    
T  40376471 caaataaaatctcatcaaaaatatttaaaaacatgactttctcacccattactctcaccaatgtagttttaccagagtcacgcctaccgtacaatcctat 40376372  T
Q  138 catagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacac---aaaatatttcctgaagagaagtgctct 234  Q
     |||   |||||||||||| ||||||| || |||| || |||||||| ||| ||| | ||||| ||||||   ||| |||||||| |||||||||| |||    
T  40376371 tatacgacaattatcatcttgcagtgcttccaaaagttcatctgaagccttctctgtcgacttgaaacactcaaaattatttcctaaagagaagtgttct 40376272  T
Q  235 aaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaattcattccattgtcgttttc 334  Q
    ||||||||||||  | |||||||||||||||| |  |||||   ||| |  ||  | || |||  | |||| ||  |||||||| |||||  | ||  |     
T  40376271 aaacttggaattataattgaaaatggatcaaaattacatttcttatttagtgctttaatgttttcctgcaaattattaaattcaatccatgatggtggtt 40376172  T
Q  335 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 434  Q
    ||||||||| ||  ||||| || || ||||| |||| ||| ||||||| ||||||||||||||||||| ||||  ||||||||||||||||  ||||| |    
T  40376171 ttgattgtactgcaagattctccacttcttgtatgattatgtctgttttttttagccactcaaacacaacatctctgaccttttcagttttaggatcaat 40376072  T
Q  435 tgcttcaacttttacgcgcacaagatctcgatttgaa 471  Q
    ||||||||||||| |  ||||| |||| |||||||||    
T  40376071 tgcttcaacttttgcatgcacacgatcgcgatttgaa 40376035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 40283299 - 40283161
Alignment:
Q  335 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 434  Q
    ||||||||| ||| ||||| || |  ||||| ||||  || ||||||||||||||||||||||||||| ||||  | ||||||||||||||   |||| |    
T  40283299 ttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaat 40283200  T
Q  435 tgcttcaacttttacgcgcacaagatctcgatttgaaat 473  Q
    ||||||||||||| | ||| || |||| |||||||||||    
T  40283199 tgcttcaacttttgcacgcgcacgatcacgatttgaaat 40283161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 40257607 - 40257737
Alignment:
Q  54 aaaaatctttagatacttaactttctcacccattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatca 153  Q
    ||||||||||| ||||||  |||||||||| | ||||||  |||||  ||| ||||||||||||||  | ||||| |||||||| ||| |||||||| |     
T  40257607 aaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattaccg 40257706  T
Q  154 tctcgcagtgcctctaaaatttgatctgaag 184  Q
    ||| |||||||||| |||| |||||| ||||    
T  40257707 tcttgcagtgcctccaaaagttgatccgaag 40257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 40310474 - 40310350
Alignment:
Q  160 agtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatg 259  Q
    |||||||| |||| |  |||||||||||  | | ||| || |||||| | || |||||| |||||||||||||||||||||||||||||| |  ||||||    
T  40310474 agtgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatg 40310375  T
Q  260 gatcaaattcgcattttacattcaa 284  Q
    | ||||| || ||||| | ||||||    
T  40310374 gctcaaactcacatttgatattcaa 40310350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 476
Target Start/End: Complemental strand, 40276970 - 40276846
Alignment:
Q  352 ttttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgc 451  Q
    ||||| |||||||| |||||||| |||| ||||||||||||||  | |||| ||||| | ||||| ||| || | |||||| |||||| |  |||| | |    
T  40276970 ttttctacctcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcac 40276871  T
Q  452 gcacaagatctcgatttgaaatcag 476  Q
     |||| |||| ||||||||||||||    
T  40276870 tcacacgatcacgatttgaaatcag 40276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 40302930 - 40302840
Alignment:
Q  380 tttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 473  Q
    ||||||| ||||||||||| | || || |||||  |||||||||||   | ||||||||||| ||||| | |||||||||| ||||||||||||    
T  40302930 tttctttaagccactcaaaaatagtattgttgattttttcagtttt---agcagttgcttcagctttttcccgcacaagatatcgatttgaaat 40302840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 40310256 - 40310190
Alignment:
Q  381 ttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaactttt 447  Q
    |||||||||||||||||  |||  ||| |||||||||| |||||| ||||| |||||||||| ||||    
T  40310256 ttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttt 40310190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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