View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_low_11 (Length: 414)

Name: NF3606_low_11
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_low_11
NF3606_low_11
[»] chr5 (1 HSPs)
chr5 (14-406)||(29506350-29506745)
[»] scaffold0017 (4 HSPs)
scaffold0017 (14-247)||(181523-181756)
scaffold0017 (14-253)||(170436-170675)
scaffold0017 (340-406)||(170753-170819)
scaffold0017 (342-395)||(181842-181895)
[»] chr1 (11 HSPs)
chr1 (15-272)||(17810621-17810878)
chr1 (20-249)||(35900005-35900234)
chr1 (14-253)||(44145889-44146131)
chr1 (14-250)||(44613625-44613861)
chr1 (14-250)||(44794477-44794713)
chr1 (15-269)||(11543399-11543653)
chr1 (336-400)||(11543274-11543338)
chr1 (344-406)||(44613885-44613947)
chr1 (344-406)||(44794391-44794453)
chr1 (341-406)||(44146214-44146278)
chr1 (335-395)||(35900314-35900374)
[»] scaffold0061 (2 HSPs)
scaffold0061 (14-253)||(28117-28356)
scaffold0061 (340-406)||(27973-28039)
[»] chr3 (3 HSPs)
chr3 (14-246)||(26729172-26729404)
chr3 (17-270)||(8343582-8343835)
chr3 (339-406)||(26729497-26729564)
[»] chr2 (4 HSPs)
chr2 (65-255)||(29227845-29228035)
chr2 (65-255)||(29341144-29341334)
chr2 (345-406)||(29227697-29227758)
chr2 (345-406)||(29340996-29341057)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 29506745 - 29506350
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29506745 aacaaattggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccagttaataatcttaagccttc 29506646  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    ||   ||| | |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29506645 gactcaatgatttcaacgaaagcctgccttcaaacctatgttatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 29506546  T
Q  214 aacatgtgtaaagaattttacttcaatggctcaggacaccgtgaactccacttcatcgatccgtcatttgtatacaatcaatggtactg---atatagtt 310  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||    ||||| |||| ||||||||  |||||   |||| |      
T  29506545 aacatgtgtaaagaattttacttcaatggctcagggcaccatgaactcaacttcattgacgtatcattcgtatgcaatcaatattactgataatatggga 29506446  T
Q  311 atctatgtagactatgaatttgatctattcttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    ||  || |    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||| |||||    
T  29506445 atgaattttatatatgaatttgatctattcttgatgtggaaaggtgtggaccgactctttaaaaatgcagataagtttttaaacagcattgatctc 29506350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 126; Significance: 7e-65; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 181523 - 181756
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||||||    
T  181523 aacaagttggctctgttggatcttggagaaaataagtttcatggtccattacctgcatggattggacaaagtttacaccaattagtaatcttaagccttc 181622  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    |||  || |||||||| | ||  || ||||||||  |||| ||||||| | ||||||| ||||||||| ||||  |||||||||||||||||||||||||    
T  181623 gattcaacaacttcaatggaattcttccttcaaatctctgttatttgacaaaacttcatgtcttggatctgtccgtaaatagcttatcaggaggaatccc 181722  T
Q  214 aacatgtgtaaagaattttacttcaatggctcag 247  Q
    ||| |||||||||||||||||||||||| |||||    
T  181723 aacttgtgtaaagaattttacttcaatgactcag 181756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 170436 - 170675
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||  ||||  |||||| |||||||||||||||    
T  170436 aacaagttggctatgttggatcttggagaaaatatgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttc 170535  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    |||  ||||||||||| | ||| || ||||||||  | || ||||||| | ||||||| ||||| ||| ||||||||||||  |||||||||||||||||    
T  170536 gattcaataacttcaatggaagtctaccttcaaatctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccc 170635  T
Q  214 aacatgtgtaaagaattttacttcaatggctcaggacacc 253  Q
     || |||||||| ||||| |||||||||||||||||||||    
T  170636 cacttgtgtaaacaatttaacttcaatggctcaggacacc 170675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 170753 - 170819
Alignment:
Q  340 cttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||| |||||||||||||||| |   |||||||||||||||||||||||||||| |||| |||||    
T  170753 cttgatttggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctc 170819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 181842 - 181895
Alignment:
Q  342 tgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaa 395  Q
    ||||||||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  181842 tgatgtggaaaggtgcagacagacggtacaaaaatgcagataagtttttaaaaa 181895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 17810878 - 17810621
Alignment:
Q  15 acaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttcg 114  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||| |||||    
T  17810878 acaagctggctttgttggacctcggagaaaataagtttcatggtccattaccttcatgggttggagacaatttacaccaattagtaatcttaagtcttcg 17810779  T
Q  115 atctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccca 214  Q
    ||  ||||| || |  | |||  | ||||||||  | || ||||||||| |||||| ||| |||||| |||||||||||| |||||||||||||||||||    
T  17810778 attcaataatttaagtggaagtataccttcaaatgtatgttatttgagaaaacttcgagtattggatctgtcactaaataacttatcaggaggaatccca 17810679  T
Q  215 acatgtgtaaagaattttacttcaatggctcaggacaccgtgaactccacttcatcga 272  Q
    || ||||||| |||||||||| ||||| |||| |||||||||||||| ||||||||||    
T  17810678 acttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaacttcatcga 17810621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 35900005 - 35900234
Alignment:
Q  20 ttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttcgatcta 119  Q
    |||||||| ||||| |||||||||||||| |||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||| |  |    
T  35900005 ttggctttattggatcttggagaaaatatatttcatggtccattacctttatggattggagatagtttgcaccaattaataatcttaagccttcggttca 35900104  T
Q  120 ataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatg 219  Q
    |||| ||||| | ||| || ||||||||  |||| ||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  35900105 ataaattcaatggaagtctaccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttg 35900204  T
Q  220 tgtaaagaattttacttcaatggctcagga 249  Q
    |||||||||| |||||| ||||||||||||    
T  35900205 tgtaaagaatcttactttaatggctcagga 35900234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 44145889 - 44146131
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttc---atggattggagacagtttacaccaattaataatcttaagcc 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||   |||||||   |||||||||||| ||||||||||||||| ||||||||||||    
T  44145889 aacaagttggctttgttggatcttggagaaaatatgtttcatggtctgttaccttcttcatggattggagatagtttacaccaattagtaatcttaagcc 44145988  T
Q  111 ttcgatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttc-aagtcttggatttgtcactaaatagcttatcaggaggaa 209  Q
    | | ||  ||||||||||| | ||| || ||||||||  |||| ||||||| | | | || ||||||||||| |||||||||||||||||||||||||||    
T  44145989 tccaattcaataacttcaatggaagtctaccttcaaatctctg-tatttgaaaaatcctccaagtcttggatctgtcactaaatagcttatcaggaggaa 44146087  T
Q  210 tcccaacatgtgtaaagaattttacttcaatggctcaggacacc 253  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||    
T  44146088 tcccaacttgtgtaaataattttacttcaatggatcaggacacc 44146131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 44613625 - 44613861
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||  | |||  ||||||||||||||    
T  44613625 aacaagttggctttgttggatcttggagaaaataagtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttc 44613724  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    |||| ||||||||| | | |||  | ||||||||  |||| || |||| | ||||||||||||||||||||||||| || | | |||||||| |||||||    
T  44613725 gatccaataacttctatggaagtttaccttcaaatctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatccc 44613824  T
Q  214 aacatgtgtaaagaattttacttcaatggctcaggac 250  Q
    ||| ||| |||| |||||||| |||||| || |||||    
T  44613825 aacttgtataaacaattttacatcaatgtcttaggac 44613861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 44794713 - 44794477
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||  | |||  ||||||||||||||    
T  44794713 aacaagttggctttgttggatcttggagaaaataagtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttc 44794614  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    |||| ||||||||| | | |||  | ||||||||  |||| || |||| | ||||||||||||||||||||||||| || | | |||||||| |||||||    
T  44794613 gatccaataacttctatggaagtttaccttcaaatctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatccc 44794514  T
Q  214 aacatgtgtaaagaattttacttcaatggctcaggac 250  Q
    ||| ||| |||| |||||||| |||||| || |||||    
T  44794513 aacttgtataaacaattttacatcaatgtcttaggac 44794477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 11543653 - 11543399
Alignment:
Q  15 acaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttcg 114  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||| ||| || |||||||||||||| |    
T  11543653 acaagttggctatcttggaccttggagaaaatacgtttcatggtccgttaccttcatggattggaggcagtttacaacaactagtaatcttaagcctttg 11543554  T
Q  115 atctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccca 214  Q
    | | ||||||||||  | |||  | ||||||||  |||| ||||| ||| |||| ||  |||| ||| |||||||||||||||||||||||||| | ||     
T  11543553 agccaataacttcagtggaagtataccttcaaatctctgttatttaagaaaactgcatatcttagatatgtcactaaatagcttatcaggaggacttccg 11543454  T
Q  215 acatgtgtaaagaattttacttcaatggctcaggacaccgtgaactccacttcat 269  Q
     |||||||||| |||||||| || ||||||   |||||| ||||||| |||||||    
T  11543453 ccatgtgtaaacaattttacatcgatggctgtagacaccatgaactcaacttcat 11543399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 11543338 - 11543274
Alignment:
Q  336 tattcttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcatt 400  Q
    |||||||||| |||||||||||||| | || ||||| ||||||||||| | ||||||||||||||    
T  11543338 tattcttgatatggaaaggtgtagatcaaccctacagaaatgcagataggcttttaaaaagcatt 11543274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 44613885 - 44613947
Alignment:
Q  344 atgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||| |||| |  || |||||||||||||||||||||||||| |||| |||||    
T  44613885 atgtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctc 44613947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 44794453 - 44794391
Alignment:
Q  344 atgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||| |||| |  || |||||||||||||||||||||||||| |||| |||||    
T  44794453 atgtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctc 44794391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 44146214 - 44146278
Alignment:
Q  341 ttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||||||| |||||| |||| ||||  |||||||| ||||||||| |||| |||||    
T  44146214 ttgatgtggaaaggtgtaaaccgaccctac-aaaacccagataagcttttaaaaaccattgatctc 44146278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 35900314 - 35900374
Alignment:
Q  335 ctattcttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaa 395  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  ||| |||||||||||    
T  35900314 ctattcttgatgtggaaaggggtagaccaactttacataaatccttataggtttttaaaaa 35900374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 28356 - 28117
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||  ||||  |||||| |||||||||||||||    
T  28356 aacaagttggctatgttggatcttggagaaaatatgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttc 28257  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    |||  ||||||||||| | ||| || ||||||||  | || ||||||| | ||||||| ||||| ||| ||||||||||||  |||||||||||||||||    
T  28256 gattcaataacttcaatggaagtctaccttcaaatctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccc 28157  T
Q  214 aacatgtgtaaagaattttacttcaatggctcaggacacc 253  Q
     || |||||||| ||||| |||||||||||||||||||||    
T  28156 cacttgtgtaaacaatttaacttcaatggctcaggacacc 28117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 28039 - 27973
Alignment:
Q  340 cttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||| |||||||||||||||| |   |||||||||||||||||||||||||||| |||| |||||    
T  28039 cttgatttggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctc 27973  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 26729172 - 26729404
Alignment:
Q  14 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||  ||||||||||| ||||||||||    
T  26729172 aacaagttggctttgttggaccttggagaaaatatgtttcatggtccattacctgcatggattggagagagtttacggcaattaataatattaagccttc 26729271  T
Q  114 gatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatccc 213  Q
    | |  ||||||||| | | |||  | |||||||| || || ||||||||| | |||  |||||||||| | || ||||||| ||||||||||||||||||    
T  26729272 ggttcaataacttctatggaagtataccttcaaatatttgttatttgagaaaccttagagtcttggatctttccctaaataacttatcaggaggaatccc 26729371  T
Q  214 aacatgtgtaaagaattttacttcaatggctca 246  Q
    ||||||||| |  ||||||||||| ||| ||||    
T  26729372 aacatgtgtgagtaattttacttccatgactca 26729404  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 8343582 - 8343835
Alignment:
Q  17 aagttggctttgttggaccttggagaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccaattaataatcttaagccttcgat 116  Q
    |||||| ||||||||||  |||||||||||| ||||||||||||| |||||||||||||||||||||  ||||| |||||| ||||||||||| |||||     
T  8343582 aagttgactttgttggaaattggagaaaataagtttcatggtccattaccttcatggattggagacaacttacatcaattagtaatcttaagcattcgag 8343681  T
Q  117 ctaataacttcaacgaaagcctgccttcaaacatctgctatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaac 216  Q
      ||||||||||| | |||  | ||||||||  | || ||||||||| ||||||| ||||||||| |||| ||||||| |||||||||||| || ||| |    
T  8343682 tcaataacttcaatggaagtataccttcaaatctttgttatttgagaaaacttcatgtcttggatctgtcgctaaataacttatcaggagggattccacc 8343781  T
Q  217 atgtgtaaagaattttacttcaatggctcaggacaccgtgaactccacttcatc 270  Q
    |||||||||   | |||||||| | ||| | ||| || ||||||| ||||||||    
T  8343782 atgtgtaaattttcttacttcattagctgatgaccccatgaactcaacttcatc 8343835  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 26729497 - 26729564
Alignment:
Q  339 tcttgatgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| |||||    
T  26729497 tcttgatgtggaaaggtgaagaccaaccctacaaaaatgcagatatgtttttaaaaagcattgatctc 26729564  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 29228035 - 29227845
Alignment:
Q  65 ccttcatggattggagacagtttacaccaattaataatcttaagccttcgatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagag 164  Q
    |||| |||||||||||||||| ||||   || | |||||||||||||||||||||| | |||||| | ||| ||  |||||||  |||| ||||||||||    
T  29228035 cctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctgttatttgagag 29227936  T
Q  165 aacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatgtgtaaagaattttacttcaatggctcaggacaccgt 255  Q
    |||||||||| || ||| |||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| || |||| |||||    
T  29227935 aacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatgactaaggataccgt 29227845  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 29341334 - 29341144
Alignment:
Q  65 ccttcatggattggagacagtttacaccaattaataatcttaagccttcgatctaataacttcaacgaaagcctgccttcaaacatctgctatttgagag 164  Q
    |||| |||||||||||||||| ||||   || | |||||||||||||||||||||| | |||||| | ||| ||  |||||||  |||| ||||||||||    
T  29341334 cctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctgttatttgagag 29341235  T
Q  165 aacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatgtgtaaagaattttacttcaatggctcaggacaccgt 255  Q
    |||||||||| || ||| |||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| || |||| |||||    
T  29341234 aacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatgactaaggataccgt 29341144  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 29227758 - 29227697
Alignment:
Q  345 tgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||| ||| ||  ||||||||||| |||| ||||||||||| |||| |||||    
T  29227758 tgtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctc 29227697  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 29341057 - 29340996
Alignment:
Q  345 tgtggaaaggtgtagaccgactctacaaaaatgcagataagtttttaaaaagcattcatctc 406  Q
    |||||||||||||| ||| ||  ||||||||||| |||| ||||||||||| |||| |||||    
T  29341057 tgtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctc 29340996  T

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