View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_low_18 (Length: 332)
Name: NF3606_low_18
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4620762 - 4621083
Alignment:
| Q |
1 |
aaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgctaaattaaatagcacaaatcaaaatcagcaca |
100 |
Q |
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||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
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| T |
4620762 |
aaaaaggcgaagctagaattattgcgctgtgctacaaagctccgtgcttctggggtaataattcgagctaaattaaatagcacaaatcaaaatcagcata |
4620861 |
T |
|
| Q |
101 |
agttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactgaagtgaagtggag |
195 |
Q |
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| T |
4620862 |
agttggtggatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatatatcaaggaaacaactgaagttaagtggag |
4620961 |
T |
|
| Q |
196 |
gaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggtttgatatgttgtgagcatgacatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
4620962 |
gaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatgcacttcttatgcactttttttcaatggtttgatatgctgtgagcatgacatt |
4621061 |
T |
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| Q |
296 |
gaattacttcaagaaaaaggtg |
317 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4621062 |
gaattacttcaagaaaaaggtg |
4621083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4591227 - 4591551
Alignment:
| Q |
1 |
aaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgct---aaattaaatagcacaaatcaaaatcagc |
97 |
Q |
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| T |
4591227 |
aaaaaagcaaagctagaattgttatattgtgctacaaagcttcgtgcttctggggtaacgattcgagctgctaaattaaatatcacaaatcaaaatcaac |
4591326 |
T |
|
| Q |
98 |
acaagttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactgaagtgaagtg |
192 |
Q |
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| T |
4591327 |
atgagttggtggatatatttgattttgatataagttttagtgattagggagagttgaatattccgccgctatatattaaagaaacaacggaagtgaagtg |
4591426 |
T |
|
| Q |
193 |
gaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggtttgatatgttgtgagcatgac |
292 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||| |
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| T |
4591427 |
gaggaatttgattgcttgggagcaaagcaaaaattggattagatgcaaatacacatcctatgcacttttctttaatggtttgatatgttgtgaacatgac |
4591526 |
T |
|
| Q |
293 |
attgaattacttcaagaaaaaggtg |
317 |
Q |
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|||||||| ||||| ||||||||| |
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| T |
4591527 |
attgaattgcttcagaaaaaaggtg |
4591551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4554933 - 4555248
Alignment:
| Q |
1 |
aaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgctaaattaaatagcacaaatcaaaatcagcaca |
100 |
Q |
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||||| |||||||| ||||| || |||||||||||||||||| | || | || |||||||| |||||||||||||||||||||||| ||| || | |
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| T |
4554933 |
aaaaaggcgaagctagaattactgtgttgtgctacaaagcttcatact----gtgttatgattcgagctaaattaaatagcacaaatcaatctcaacaga |
4555028 |
T |
|
| Q |
101 |
agttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactgaagtgaagtggag |
195 |
Q |
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| T |
4555029 |
agttggtggatatgtttgattttgatgtgagttttagtgattttggggagttgataatttcaccactatatattaaggaaagaacggaagtgaagtggag |
4555128 |
T |
|
| Q |
196 |
gaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggtttgatatgttgtgagcatgacatt |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
4555129 |
gaatttgattgcttgggagcaaagcaaaatttggagtaaatgcaaatacacttcctatgcacttttctttaatggtttgatatgttgtgagcatgacatt |
4555228 |
T |
|
| Q |
296 |
gaattacttcaagaaaaagg |
315 |
Q |
| |
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||| | ||||| |||||||| |
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| T |
4555229 |
gaaatgcttcaggaaaaagg |
4555248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 18521903 - 18522028
Alignment:
| Q |
172 |
ggaaacaactgaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggt |
271 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| || | | ||||||| | ||||||||||||||||| ||||| | ||||||| |
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| T |
18521903 |
ggaaacaacggaagtgaagtggaggaatttgattgcttgggaacagaatagaatttgggtaagatgcaaatacacttcatatgctctattcttcaatggt |
18522002 |
T |
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| Q |
272 |
ttgatatgttgtgagcatgacattga |
297 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
18522003 |
ttgatatgttgtaagcatgacattga |
18522028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 14193210 - 14193353
Alignment:
| Q |
172 |
ggaaacaactgaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggt |
271 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| || || ||||| | ||| ||| |
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| T |
14193210 |
ggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattagatgcaaatatacatcctatgctcttttcttcaaaggt |
14193309 |
T |
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| Q |
272 |
ttgatatgttgtgagcatgacattgaattacttcaagaaaaagg |
315 |
Q |
| |
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|||||||| ||||| |||||||| ||| |||||||||||||| |
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| T |
14193310 |
ttgatatgctgtgaatctgacattggattgcttcaagaaaaagg |
14193353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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