View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_low_22 (Length: 271)
Name: NF3606_low_22
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_low_22 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34296220 - 34296440
Alignment:
| Q |
1 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296220 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttca |
34296319 |
T |
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| Q |
101 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296320 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
34296419 |
T |
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| Q |
201 |
aaaattggtgtcattgatggt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34296420 |
aaaattggtgtcattgatggt |
34296440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31347613 - 31347697
Alignment:
| Q |
1 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgt |
85 |
Q |
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|||| ||||||||||| |||||| ||||||| |||| |||||||| || |||||||| || ||||| | |||||||| ||||| |
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| T |
31347613 |
gtgataatattggcacaacttacctatgttctaatctcgtatttcattcaagaatgaaacacattgccatggattatcactttgt |
31347697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24485805 - 24485583
Alignment:
| Q |
1 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttca |
100 |
Q |
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| T |
24485805 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagaaggttca |
24485706 |
T |
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| Q |
101 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485705 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
24485606 |
T |
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| Q |
201 |
--aaaattggtgtcattgatggt |
221 |
Q |
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| T |
24485605 |
aaaaaattggtgtcattgatggt |
24485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 24494139 - 24493935
Alignment:
| Q |
1 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24494139 |
gtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagaaggttca |
24494040 |
T |
|
| Q |
101 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494039 |
acttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac |
24493940 |
T |
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| Q |
201 |
aaaat |
205 |
Q |
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||||| |
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| T |
24493939 |
aaaat |
24493935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 58251 - 58037
Alignment:
| Q |
3 |
gacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaac |
102 |
Q |
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|||||||||||||| ||||| ||||| || ||| |||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||| |
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| T |
58251 |
gacaatattggcacaacttatttatgctctaattcggtctttcactcaagaatgaagcacattgcacttgattatcactttgtgaggcagcaagttcaaa |
58152 |
T |
|
| Q |
103 |
ttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaa |
202 |
Q |
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||| ||| | |||||| || || ||| ||||| |||| |||||||||||| | || || || | |||||||| || |||||| ||||||||||||| |
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| T |
58151 |
atggaaaactcatagtctctcacatctcttcaaagaatcaccttgcagacattctgactaagccattgcatcgcacaaggttttcacttctcagagacaa |
58052 |
T |
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| Q |
203 |
aattggtgtcattga |
217 |
Q |
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||| ||||||||||| |
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| T |
58051 |
aataggtgtcattga |
58037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 38569621 - 38569673
Alignment:
| Q |
21 |
tacttatgttccaatccggtatttcactctagaatgaagcatattgcacttga |
73 |
Q |
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|||||||| || ||||| || ||||||||| ||||||||||||| |||||||| |
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| T |
38569621 |
tacttatgctctaatccagtttttcactctcgaatgaagcatatcgcacttga |
38569673 |
T |
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