View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_low_34 (Length: 236)
Name: NF3606_low_34
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 46901340 - 46901120
Alignment:
| Q |
16 |
acatctcccatcttaatcttctcctcctcacgttgacactcagcattgaaagctgctgcagattgagccattgaagccaaacctcccggtgttataatat |
115 |
Q |
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| T |
46901340 |
acatctcccatcttaatcttctcctcctcacgttgacactcagcattgaaagctgctgcagattgagccattgaagccaaacctcccggtgttataacat |
46901241 |
T |
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| Q |
116 |
tactccccgtagctctcacctccgccgcttgtatcgcagaggcgtcactctgttccaccggcttgtcacccaccgtgtgggccgtcgcctctagtgcctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46901240 |
tactccccgtagctctcacctccgccgcttgtatcgcagaggcgtcactctgttccaccggcttgtcgcccaccgtgtgggccgtcgcctctagtgcctc |
46901141 |
T |
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| Q |
216 |
tccgatggttaatgcactctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
46901140 |
tccgatggttaatgcactctc |
46901120 |
T |
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