View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_low_8 (Length: 518)
Name: NF3606_low_8
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Complemental strand, 41738050 - 41737554
Alignment:
| Q |
14 |
agaaacaacataaattactctcctactattgtatgaatttaatccaaattacttagccaacaattgaaaaagatatttactatttatgtcattcatgtgg |
113 |
Q |
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| T |
41738050 |
agaaacaacataaactactctcctactattgtatgaatttaatccaaattacttagccaacaattgaaaaagatatttactatttatgtcattcatgtgg |
41737951 |
T |
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| Q |
114 |
ggtgnnnnnnnnnnnnnnncttagtagttttgtagttgaaaatccacctcttaagataaataagtagagtattcaaaatttaaacttcaactcatacata |
213 |
Q |
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| T |
41737950 |
ggtgtttttttcttttt--cttagtagttttgtagttgaaaatccacct--taagatgaataagtagggtatttaaaatttaaacttcaactcatacaca |
41737855 |
T |
|
| Q |
214 |
tataatgtaatgtctttatcaattaagttaaacttacaggaccgcatgaggtgtgttttataaaatgacatacnnnnnnnnnaggaaaacaaataaaatt |
313 |
Q |
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| T |
41737854 |
tataatgtaatatctttattaattaagttaaacttacaggatcaaatgagatgtgttttataaaatgacaaatactttttttaggaaaacaaataaaatt |
41737755 |
T |
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| Q |
314 |
aagaaataaaaggagagcataaatttctcttacaccattatctaataaaatacttgaatttaatttttgaaattggtaagttattttaggacaaatgttt |
413 |
Q |
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| T |
41737754 |
aagaaataaaaggagagcataaatttctcttacaccattatctaataaaatacttgaatttaatttttgaaattggtcagttattttaggacaaatgttt |
41737655 |
T |
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| Q |
414 |
tgtacaaatgactgagttatttattttcctctttgattcttgaatgtgatacattagcaacaccagcttgttcattacttagagggttgagatctctgct |
513 |
Q |
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| T |
41737654 |
tgtacaaatgactgagttatttattttcctctttgattcttgaatgtgatacattggcaacaccagcttgttcattacttagagggttgatatctttgct |
41737555 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 33836299 - 33836372
Alignment:
| Q |
151 |
gaaaatccacctcttaagataaataagtagagtattcaaaatttaaacttcaactcatacatatataatgtaat |
224 |
Q |
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|||||| ||||||||||||||||||||| ||| || || ||| |||| ||| ||||||||||||||||||||| |
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| T |
33836299 |
gaaaattcacctcttaagataaataagtggagaatccatgattcaaacctcacctcatacatatataatgtaat |
33836372 |
T |
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