View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3607_high_14 (Length: 247)

Name: NF3607_high_14
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3607_high_14
NF3607_high_14
[»] chr8 (10 HSPs)
chr8 (34-238)||(27492965-27493173)
chr8 (40-102)||(32840960-32841022)
chr8 (41-96)||(43368681-43368735)
chr8 (39-80)||(31751553-31751594)
chr8 (35-100)||(36338191-36338256)
chr8 (42-102)||(1930071-1930131)
chr8 (42-93)||(15247760-15247811)
chr8 (45-102)||(7918421-7918477)
chr8 (39-96)||(31875576-31875632)
chr8 (39-99)||(8060702-8060761)
[»] chr2 (18 HSPs)
chr2 (34-102)||(25800864-25800931)
chr2 (39-88)||(9174848-9174897)
chr2 (42-102)||(16451154-16451214)
chr2 (35-102)||(2142683-2142750)
chr2 (35-94)||(36534797-36534856)
chr2 (158-216)||(33623688-33623746)
chr2 (39-96)||(40279230-40279287)
chr2 (38-102)||(1742007-1742070)
chr2 (43-94)||(18066165-18066216)
chr2 (39-159)||(26202061-26202185)
chr2 (35-69)||(23956039-23956073)
chr2 (39-93)||(28039316-28039369)
chr2 (40-102)||(43530086-43530147)
chr2 (39-96)||(40279300-40279357)
chr2 (39-96)||(40279370-40279427)
chr2 (39-80)||(40682391-40682432)
chr2 (45-102)||(41812066-41812123)
chr2 (39-100)||(43570447-43570507)
[»] chr4 (16 HSPs)
chr4 (35-85)||(24410926-24410976)
chr4 (40-99)||(2996607-2996665)
chr4 (39-93)||(1706655-1706709)
chr4 (39-141)||(54426076-54426182)
chr4 (40-104)||(22662220-22662283)
chr4 (162-205)||(6362740-6362783)
chr4 (39-102)||(25904197-25904260)
chr4 (39-90)||(55414406-55414457)
chr4 (38-92)||(1374560-1374614)
chr4 (43-93)||(7839344-7839394)
chr4 (39-93)||(21523591-21523644)
chr4 (39-88)||(6466035-6466083)
chr4 (45-97)||(1965980-1966031)
chr4 (40-104)||(22666699-22666762)
chr4 (39-71)||(52259664-52259696)
chr4 (39-99)||(53315359-53315418)
[»] chr6 (11 HSPs)
chr6 (39-102)||(20368155-20368217)
chr6 (39-93)||(34882404-34882458)
chr6 (39-102)||(9559513-9559579)
chr6 (39-94)||(1575928-1575982)
chr6 (39-98)||(7148699-7148757)
chr6 (45-100)||(24476641-24476696)
chr6 (39-94)||(31624123-31624177)
chr6 (35-69)||(6536644-6536678)
chr6 (39-100)||(9912167-9912228)
chr6 (39-87)||(9109103-9109151)
chr6 (39-71)||(17770459-17770491)
[»] chr3 (14 HSPs)
chr3 (35-80)||(35394494-35394539)
chr3 (39-102)||(21367700-21367763)
chr3 (39-94)||(5391912-5391966)
chr3 (37-141)||(31365119-31365227)
chr3 (39-93)||(25453842-25453896)
chr3 (42-117)||(45264321-45264400)
chr3 (158-207)||(16792283-16792332)
chr3 (39-92)||(19983808-19983860)
chr3 (45-102)||(29427620-29427676)
chr3 (42-102)||(402516-402576)
chr3 (39-71)||(3044264-3044296)
chr3 (44-88)||(23816256-23816300)
chr3 (39-71)||(25925775-25925807)
chr3 (43-99)||(28240355-28240410)
[»] chr1 (20 HSPs)
chr1 (35-87)||(51695484-51695536)
chr1 (39-94)||(3887614-3887669)
chr1 (42-93)||(24915034-24915085)
chr1 (42-141)||(2295132-2295235)
chr1 (39-93)||(7941639-7941693)
chr1 (40-102)||(11941296-11941358)
chr1 (35-73)||(27820199-27820237)
chr1 (35-73)||(27820340-27820378)
chr1 (39-93)||(38882895-38882949)
chr1 (45-98)||(6262059-6262111)
chr1 (163-216)||(50322030-50322083)
chr1 (159-218)||(8344564-8344623)
chr1 (39-102)||(37473436-37473499)
chr1 (39-102)||(49938780-49938843)
chr1 (39-142)||(3233945-3234052)
chr1 (158-207)||(392337-392386)
chr1 (35-68)||(5063490-5063523)
chr1 (174-207)||(22925288-22925321)
chr1 (43-87)||(27146244-27146288)
chr1 (38-94)||(35925722-35925777)
[»] chr5 (10 HSPs)
chr5 (35-102)||(7984998-7985065)
chr5 (39-102)||(39105497-39105560)
chr5 (41-102)||(7808540-7808601)
chr5 (40-101)||(37954720-37954781)
chr5 (160-204)||(13262051-13262095)
chr5 (158-218)||(39994655-39994715)
chr5 (44-94)||(706501-706551)
chr5 (162-211)||(18899230-18899279)
chr5 (39-99)||(8089969-8090028)
chr5 (182-218)||(39159773-39159809)
[»] chr7 (7 HSPs)
chr7 (21-107)||(11619127-11619213)
chr7 (41-99)||(39967955-39968013)
chr7 (39-71)||(27708802-27708834)
chr7 (42-102)||(33678816-33678876)
chr7 (39-94)||(15740394-15740448)
chr7 (43-94)||(34035954-34036005)
chr7 (39-88)||(3927998-3928047)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 27492965 - 27493173
Alignment:
Q  34 ggaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcccag----tctgactaaacttacgccagctgata 129  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||     | |||| |||||||  ||||| ||||    
T  27492965 ggaatttatgaaaataagttgaaaatagcttatgaacaatgtcacaacttgttttcataagctctcccaaataatatgacaaaacttataccagcagata 27493064  T
Q  130 agctcaaataagttaatactaacaggccctttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattctactacgctataatgccacaata 229  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||     
T  27493065 agctcaaataagttaatccaaacaggccctttgtactaaattgtttattgcggaacaatagtggtctgttaaaattctactacactataatgccacaatc 27493164  T
Q  230 gctgatatt 238  Q
     ||||||||    
T  27493165 actgatatt 27493173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 32841022 - 32840960
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||| |||||| | |||||||||||| |||||| ||||||||||||| |||||||    
T  32841022 tatgaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctccca 32840960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 43368735 - 43368681
Alignment:
Q  41 atgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagct 96  Q
    ||||||||||||||||||||||| |||||| || |||||| |||||||||||||||    
T  43368735 atgaaaataagttgaaaatagctaatgaac-atgtcataagttgttttcataagct 43368681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 31751594 - 31751553
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataa 80  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  31751594 ttatgaaaataagctgaaaatagcttatgaacaatgtcataa 31751553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 36338191 - 36338256
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc 100  Q
    ||||||||||||||||| ||||||||||||  ||| ||| |||||| ||||||||| ||| |||||    
T  36338191 gaatttatgaaaataagctgaaaatagctttggaaaaatgtcataaattgttttcacaagttctcc 36338256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 1930071 - 1930131
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||| |||||| |||||||||||||| ||||||  |||||||| ||| |||||||    
T  1930071 tgaaaataagctgaaaacagcttatgaacaatgtcataaactgttttcacaagttctccca 1930131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 15247811 - 15247760
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||||||||||||||| | || ||||||||| |||||| ||||||||||||    
T  15247811 tgaaaataagttgaaaaaaactaatgaacaatgtcataagttgttttcataa 15247760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 7918477 - 7918421
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||| ||| |||||||||||| | || ||| |||||||||||||||||||||    
T  7918477 aaataagttggaaacagcttatgaaca-tgtcttaagttgttttcataagctctccca 7918421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 31875632 - 31875576
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagct 96  Q
    ||||||||||||||||||||| ||||||| || || |||||| |||||| ||||||||    
T  31875632 ttatgaaaataagttgaaaatggcttatggac-atgtcataagttgtttccataagct 31875576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8060702 - 8060761
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    ||||| ||||||| |||||||| |||||||||  || ||||| ||||||||||||||||||    
T  8060702 ttatggaaataagctgaaaataacttatgaact-ttccataatttgttttcataagctctc 8060761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 25800864 - 25800931
Alignment:
Q  34 ggaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||| |||||||    
T  25800864 ggaatttatgaaaataagttgaaaatagcttatgaacaatgtcagaa-ttgttttaataagttctccca 25800931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 9174848 - 9174897
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgtttt 88  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  9174848 ttatgaaaataagctgaaaatagcttatgaacaatgtcataagttgtttt 9174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 16451154 - 16451214
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||| |||||| |||| ||||||||| |||||| ||||||||||||| |||||||    
T  16451154 tgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttctccca 16451214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 2142683 - 2142750
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||||||| | |||| |||| ||||||| | ||| |||||||||||||||| |||||||    
T  2142683 gaatttatgaaaataagctaaaaacagctaatgaacattgtcacaacttgttttcataagttctccca 2142750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 36534797 - 36534856
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    ||||| ||||||||||| ||||||||| ||||||||||||| ||||  ||||||||||||    
T  36534797 gaattaatgaaaataagctgaaaatagattatgaacaattttataagctgttttcataag 36534856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 33623688 - 33623746
Alignment:
Q  158 ctttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattctactacgcta 216  Q
    ||||||||||||| |  ||| |||||||||||||| |||||||||||||| ||||||||    
T  33623688 ctttgtactaaatagcatatagtggaacaatagtgatttgttaaaattctgctacgcta 33623746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40279230 - 40279287
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagct 96  Q
    |||||||||| || ||||||||| |||||||||||  ||||| |||||||||||||||    
T  40279230 ttatgaaaattagctgaaaatagtttatgaacaatgccataagttgttttcataagct 40279287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 1742070 - 1742007
Alignment:
Q  38 tttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||| |||||||||||| |||||||||| || || |||||| |||||| ||||||||||||||    
T  1742070 tttatggaaataagttgaagatagcttatgcac-atgtcataagttgtttccataagctctccca 1742007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 18066165 - 18066216
Alignment:
Q  43 gaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    ||||||||| |||||||||||||||| |||| ||||||  ||||||||||||    
T  18066165 gaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataag 18066216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 26202061 - 26202185
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccc----agtctgactaaacttacgccagctgataagctc 134  Q
    |||||||||||||||||||| |||||||||| | | |||||| ||||| ||||||  |||  |    | ||| || ||||||| | |||| |||||| ||    
T  26202061 ttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataaattctagcaaagaatctcacaaaacttatgtcagcagataagttc 26202160  T
Q  135 aaataagttaatactaacaggccct 159  Q
    |||||||||||| | ||||||||||    
T  26202161 aaataagttaatccaaacaggccct 26202185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 23956073 - 23956039
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaa 69  Q
    |||||||||||||||||||||||| ||||||||||    
T  23956073 gaatttatgaaaataagttgaaaaaagcttatgaa 23956039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 28039369 - 28039316
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||| ||||||| |||||| |||||||||||||  |||||||||||||||||||    
T  28039369 ttatggaaataagctgaaaacagcttatgaacaa-gtcataacttgttttcataa 28039316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 43530147 - 43530086
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||| |||||||||||||||||||| ||||| || ||||||  |||||||||||| |||||||    
T  43530147 tatggaaataagttgaaaatagcttgtgaac-atgtcataatctgttttcataagttctccca 43530086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40279300 - 40279357
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagct 96  Q
    |||||||||| || |||||| || |||||||||||  ||||| |||||||||||||||    
T  40279300 ttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataagct 40279357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40279370 - 40279427
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagct 96  Q
    |||||||||| || |||||| || |||||||||||  ||||| |||||||||||||||    
T  40279370 ttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataagct 40279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 40682432 - 40682391
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataa 80  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
T  40682432 ttatgaaaataagttgaaaacaacttatgaacaatgtcataa 40682391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 41812123 - 41812066
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||||| |||||||||| ||| ||||||  |||||||| ||| |||||||    
T  41812123 aaataagttgaaaaaagcttatgaaaaatgtcataagctgttttcaaaagttctccca 41812066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 43570447 - 43570507
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc 100  Q
    ||||||||||||| | |||| |||||||||||||| ||||||  |||||||||||| |||||    
T  43570447 ttatgaaaataagctaaaaa-agcttatgaacaatgtcataagctgttttcataagttctcc 43570507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 24410926 - 24410976
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgt 85  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  24410926 gaattcatgaaaataagttgaaaatagcttatgaacaatttcataagttgt 24410976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 2996607 - 2996665
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    ||||||||||||||||||| |||||||| || || |||||| ||||||||||||||||||    
T  2996607 tatgaaaataagttgaaaaaagcttatggac-atgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 1706655 - 1706709
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    |||||||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  1706655 ttatgaaaataagttggaaatagcttatgaacaatgccataagctgttttcataa 1706709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 54426076 - 54426182
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc----cagtctgactaaacttacgccagctgataagctc 134  Q
    |||||||||||| ||||||| |||||||||| | | ||||||  ||||||| |||| |||||    |||||| || ||||||| |||||  |||||||||    
T  54426076 ttatgaaaataacttgaaaaaagcttatgaaaattgtcataagctgttttcctaagttctcccaagcagtctcacaaaacttatgccagtagataagctc 54426175  T
Q  135 aaataag 141  Q
    |||||||    
T  54426176 aaataag 54426182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 22662283 - 22662220
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcccagt 104  Q
    |||| ||||||| |||||||||||||||||| || |||||| || |||||||||| |||||||||    
T  22662283 tatggaaataagctgaaaatagcttatgaac-atatcataagtttttttcataagttctcccagt 22662220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 6362740 - 6362783
Alignment:
Q  162 gtactaaattgtgtattgtggaacaatagtggtttgttaaaatt 205  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||    
T  6362740 gtactaaatcgtgtatagtggaataatagtggtttgttaaaatt 6362783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 25904260 - 25904197
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||| |||||||| |||||| |||||||||| |||  |||||  ||||||||||||||||||||    
T  25904260 ttataaaaataagctgaaaaaagcttatgaaaaatggcataagctgttttcataagctctccca 25904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 55414457 - 55414406
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttca 90  Q
    |||||||||||||||||||| |||||||||| ||| ||||||  ||||||||    
T  55414457 ttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 1374614 - 1374560
Alignment:
Q  38 tttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcata 92  Q
    |||||||||||||||||||||||  ||||||| | | |||||| |||||||||||    
T  1374614 tttatgaaaataagttgaaaataatttatgaatattgtcataagttgttttcata 1374560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 7839394 - 7839344
Alignment:
Q  43 gaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    |||||||||||||||| |||||||||| | | |||||| ||||||||||||    
T  7839394 gaaaataagttgaaaaaagcttatgaaaattgtcataagttgttttcataa 7839344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 21523591 - 21523644
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||||    
T  21523591 ttatgaaaataagctgaaaa-agcttatgaaaaatgtcataagttgttttcataa 21523644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 6466083 - 6466035
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgtttt 88  Q
    ||||| |||||||||||||||||||||||||| || |||||| |||||||    
T  6466083 ttatggaaataagttgaaaatagcttatgaac-atctcataagttgtttt 6466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 1965980 - 1966031
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctc 97  Q
    ||||||||| |||| ||||||||||| || |||||| ||||||||||||||||    
T  1965980 aaataagttaaaaacagcttatgaac-atgtcataagttgttttcataagctc 1966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 22666762 - 22666699
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcccagt 104  Q
    |||| ||||||  |||||||||||||||||| || |||||| || |||||||||| |||||||||    
T  22666762 tatggaaataaactgaaaatagcttatgaac-atatcataagtttttttcataagttctcccagt 22666699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 52259664 - 52259696
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaaca 71  Q
    |||||||||||||||||||||||||||| ||||    
T  52259664 ttatgaaaataagttgaaaatagcttataaaca 52259696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 53315359 - 53315418
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    ||||||||||||||| ||||||||||||| || || | |||  ||||||||||||||||||    
T  53315359 ttatgaaaataagttaaaaatagcttatggac-atgtgatatgttgttttcataagctctc 53315418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 20368217 - 20368155
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||||||||| |||||||||||| || |||||| ||||||||||||| |||||||    
T  20368217 ttatgaaaataagttgaaactagcttatgaac-atgtcataagttgttttcataagttctccca 20368155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 34882458 - 34882404
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    |||||||||||||| ||||| | |||||||||||| ||||||||| |||||||||    
T  34882458 ttatgaaaataagtggaaaacaacttatgaacaatgtcataacttattttcataa 34882404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 9559579 - 9559513
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatg---aacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||||||||||| |||||| |   |||||| |||||| ||||||||||||| |||||||    
T  9559579 ttatgaaaataagttgaaaacagcttacgcagaacaatgtcataagttgttttcataagttctccca 9559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 1575928 - 1575982
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    ||||||||||||||| |||| ||||||||||| || |||||| |||||||||||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaac-atgtcataagttgttttcataag 1575982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 7148699 - 7148757
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctct 98  Q
    ||||||||||||||||||||||||||||| ||||  |||||| |||||| | ||||||||    
T  7148699 ttatgaaaataagttgaaaatagcttatggacaa-gtcataagttgtttccgtaagctct 7148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 24476641 - 24476696
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc 100  Q
    ||||||||||||||||||||||||||||| | ||||  | |||||||||| |||||    
T  24476641 aaataagttgaaaatagcttatgaacaatgtaataaactattttcataagttctcc 24476696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 31624123 - 31624177
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    |||||||||||||||||||| ||||||||||| || ||||||  ||||||||||||    
T  31624123 ttatgaaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataag 31624177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 6536644 - 6536678
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaa 69  Q
    |||||||||||||||||||||||| ||||||||||    
T  6536644 gaatttatgaaaataagttgaaaaaagcttatgaa 6536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 9912228 - 9912167
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc 100  Q
    ||||||||||||| | |||| |||||||||||||| ||||||  || ||||||||| |||||    
T  9912228 ttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttctcc 9912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9109151 - 9109103
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttt 87  Q
    |||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  9109151 ttatgaaaataagtgggaaatagcttatggacaatgtcataacctgttt 9109103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 17770491 - 17770459
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaaca 71  Q
    ||||||||||||||||||||||| |||||||||    
T  17770491 ttatgaaaataagttgaaaatagtttatgaaca 17770459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 35394539 - 35394494
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataa 80  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  35394539 gaatttatgaaaataagttgaaaacagcttatgaacaatgtcataa 35394494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 21367700 - 21367763
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||| |||||| ||||| |||||||| ||||||  |||||||||||| |||||||    
T  21367700 ttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctccca 21367763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 5391912 - 5391966
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    |||||||||||||||||||| ||||||||||| || ||||||  ||||||||||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataag 5391966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 31365227 - 31365119
Alignment:
Q  37 atttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc----cagtctgactaaacttacgccagctgataagc 132  Q
    |||||||||||| ||||||||| |||||||||| | | ||||||  || ||||||||| |||||    |||||| || ||||||| ||||   |||||||    
T  31365227 atttatgaaaatgagttgaaaaaagcttatgaaaattgtcataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagc 31365128  T
Q  133 tcaaataag 141  Q
    |||||||||    
T  31365127 tcaaataag 31365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 25453896 - 25453842
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||||||||||| |||||| ||||| |||||| ||||||||  |||||||||||    
T  25453896 ttatgaaaataagctgaaaagagcttgtgaacattttcataagctgttttcataa 25453842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 45264400 - 45264321
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc----ccagtctgactaaactta 117  Q
    |||||||||| |||||| ||||||||||||||  | ||| ||||||||||||| ||||    ||||||| ||||||||||    
T  45264400 tgaaaataaggtgaaaacagcttatgaacaatgccgtaagttgttttcataagttctctcaaccagtctcactaaactta 45264321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 16792332 - 16792283
Alignment:
Q  158 ctttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattct 207  Q
    |||||||||||||  ||||| | ||||||||||||||||||| |||||||    
T  16792332 ctttgtactaaatattgtatcgcggaacaatagtggtttgttcaaattct 16792283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 19983808 - 19983860
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcata 92  Q
    |||||||||||||||||||| |||||||||| ||| |||||| || ||||||||    
T  19983808 ttatgaaaataagttgaaaa-agcttatgaaaaatctcataagttattttcata 19983860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 29427676 - 29427620
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||||||||||||||||| || |||| |  |||||||||||| |||||||    
T  29427676 aaataagttgaaaatagcttatgaac-atgtcattaggtgttttcataagttctccca 29427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 402576 - 402516
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||| |||| |||||| |||||||||||||| ||||||  |||||||||| | |||||||    
T  402576 tgaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcatacgttctccca 402516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 3044296 - 3044264
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaaca 71  Q
    |||||||||||||||||||| ||||||||||||    
T  3044296 ttatgaaaataagttgaaaacagcttatgaaca 3044264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 23816256 - 23816300
Alignment:
Q  44 aaaataagttgaaaatagcttatgaacaatttcataacttgtttt 88  Q
    ||||||||||||||| ||||||||||||||  |||||| ||||||    
T  23816256 aaaataagttgaaaacagcttatgaacaatgccataacctgtttt 23816300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 25925775 - 25925807
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaaca 71  Q
    |||||||||||||||||||| ||||||||||||    
T  25925775 ttatgaaaataagttgaaaacagcttatgaaca 25925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 28240355 - 28240410
Alignment:
Q  43 gaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    |||||||||||||||||||||| |||||||| ||||||  ||||||| |||| ||||    
T  28240355 gaaaataagttgaaaatagctt-tgaacaatgtcataagctgttttcctaagttctc 28240410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 51695536 - 51695484
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttt 87  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||| ||||||    
T  51695536 gaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgttt 51695484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 3887669 - 3887614
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    ||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||    
T  3887669 ttatgaaaataagttaaaaacagcttatgaacaatgtcataagatgttttcataag 3887614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 24915085 - 24915034
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||||||||||||||| |||||||||| ||| |||||| ||||||||||||    
T  24915085 tgaaaataagttgaaaaaagcttatgaaaaatgtcataagttgttttcataa 24915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 2295132 - 2295235
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc----cagtctgactaaacttacgccagctgataagctcaaa 137  Q
    ||||||||||||||| | |||||||||| | | ||||||  |||||||||||| |||||    |||||| || ||||||| |||||  ||||||||||||    
T  2295132 tgaaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaa 2295231  T
Q  138 taag 141  Q
    ||||    
T  2295232 taag 2295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 7941639 - 7941693
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    ||||||||||||||||||||||||||  ||||||| ||||||  |||||||||||    
T  7941639 ttatgaaaataagttgaaaatagcttcggaacaatgtcataagctgttttcataa 7941693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 11941296 - 11941358
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||| |||||| |||||||||||||| | ||||  | ||||||||||||||||||    
T  11941296 tatgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctccca 11941358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 27820237 - 27820199
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaat 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27820237 gaatttatgaaaataagctgaaaatagcttatgaacaat 27820199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 27820378 - 27820340
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaat 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27820378 gaatttatgaaaataagctgaaaatagcttatgaacaat 27820340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 38882949 - 38882895
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataa 93  Q
    |||||||||||||||||||| | |||||||||||||| ||||  |||||||||||    
T  38882949 ttatgaaaataagttgaaaacaccttatgaacaatttgataatctgttttcataa 38882895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 6262059 - 6262111
Alignment:
Q  45 aaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctct 98  Q
    |||||||||||||||||||||||||| || |||||| ||||| |||||||||||    
T  6262059 aaataagttgaaaatagcttatgaac-atgtcataagttgttctcataagctct 6262111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 50322083 - 50322030
Alignment:
Q  163 tactaaattgtgtattgtggaacaatagtggtttgttaaaattctactacgcta 216  Q
    ||||||||||||||| || |||||||||||||||||| |||||| |||| ||||    
T  50322083 tactaaattgtgtatcgtagaacaatagtggtttgttcaaattccactatgcta 50322030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 8344623 - 8344564
Alignment:
Q  159 tttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattctactacgctata 218  Q
    |||||||||||| |  |||||||||| |||||||||||||| ||||||| ||| ||||||    
T  8344623 tttgtactaaatagcttattgtggaaaaatagtggtttgttcaaattctgctatgctata 8344564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 37473436 - 37473499
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||| || ||| |||||||||| ||| |||||| ||||||||| ||| |||||||    
T  37473436 ttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctccca 37473499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 49938780 - 49938843
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    |||||||||||||||||||| ||||| |||| | | ||||||  |||||||||||| |||||||    
T  49938780 ttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcataagttctccca 49938843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 3234052 - 3233945
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcc----cagtctgactaaacttacgccagctgataagctc 134  Q
    |||||||||||||| ||||| | |||||||| | | | |||| ||||||||||||| |||||    |||||| || ||||||||| ||   |||||||||    
T  3234052 ttatgaaaataagtagaaaaaaacttatgaaaactgttataagttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctc 3233953  T
Q  135 aaataagt 142  Q
    ||||||||    
T  3233952 aaataagt 3233945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 392337 - 392386
Alignment:
Q  158 ctttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattct 207  Q
    |||||||||| ||||||||| | ||||||||||  |||||||||||||||    
T  392337 ctttgtactatattgtgtatcgcggaacaatagcagtttgttaaaattct 392386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 5063490 - 5063523
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatga 68  Q
    |||||||||||||||||||||||||||| |||||    
T  5063490 gaatttatgaaaataagttgaaaatagcgtatga 5063523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 22925288 - 22925321
Alignment:
Q  174 gtattgtggaacaatagtggtttgttaaaattct 207  Q
    |||| |||||||||||||||||||||||||||||    
T  22925288 gtatcgtggaacaatagtggtttgttaaaattct 22925321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 27146288 - 27146244
Alignment:
Q  43 gaaaataagttgaaaatagcttatgaacaatttcataacttgttt 87  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||||    
T  27146288 gaaagtaagttgaaaacagcttatgaacaatgtcataagttgttt 27146244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 35925722 - 35925777
Alignment:
Q  38 tttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    |||||| |||||||||||||| ||||||||||| || ||||||  ||||||||||||    
T  35925722 tttatggaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataag 35925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7984998 - 7985065
Alignment:
Q  35 gaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||||||| |||||| |||||||||||||  ||| ||  ||||||| ||||||||||||    
T  7984998 gaatttatgaaaataagctgaaaacagcttatgaacaacgtcacaagctgttttcttaagctctccca 7985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 39105497 - 39105560
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||| | ||||||||||||||||||| ||||||  |||||||||||  |||||||    
T  39105497 ttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataaattctccca 39105560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 7808540 - 7808601
Alignment:
Q  41 atgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||| |||||| |||||||||||||| | ||||  | ||||||||||||||||||    
T  7808540 atgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctccca 7808601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 37954720 - 37954781
Alignment:
Q  40 tatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccc 101  Q
    ||||||||||||||||||| |||| ||||| | ||||||||  ||||||||||| |||||||    
T  37954720 tatgaaaataagttgaaaaaagctaatgaaaattttcataagctgttttcataaactctccc 37954781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 13262051 - 13262095
Alignment:
Q  160 ttgtactaaattgtgtattgtggaacaatagtggtttgttaaaat 204  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  13262051 ttgtactaaattgtgtatcatgaaacaatagtggtttgttaaaat 13262095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 39994715 - 39994655
Alignment:
Q  158 ctttgtactaaattgtgtattgtggaacaatagtggtttgttaaaattctactacgctata 218  Q
    |||||||||| ||||  |||||| |||||||||||||||||||||| |  |||||||||||    
T  39994715 ctttgtactatattgcatattgttgaacaatagtggtttgttaaaactacactacgctata 39994655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 706501 - 706551
Alignment:
Q  44 aaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    |||||||| ||||||||||||||||||||| ||||||  | ||||||||||    
T  706501 aaaataagctgaaaatagcttatgaacaatgtcataaactattttcataag 706551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 18899230 - 18899279
Alignment:
Q  162 gtactaaattgtgtattgtggaacaatagtggtttgttaaaattctacta 211  Q
    ||||||||||| |||| |  ||||||||||||||||||||||||| ||||    
T  18899230 gtactaaattgcgtatcgcagaacaatagtggtttgttaaaattccacta 18899279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8089969 - 8090028
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    ||||||||||||| |||||| |||||| ||| | | |||||| ||||||||||||||||||    
T  8089969 ttatgaaaataagctgaaaacagcttaggaata-tatcataagttgttttcataagctctc 8090028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 39159773 - 39159809
Alignment:
Q  182 gaacaatagtggtttgttaaaattctactacgctata 218  Q
    |||||||||||||||||||||||||  ||||||||||    
T  39159773 gaacaatagtggtttgttaaaattccgctacgctata 39159809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 11619213 - 11619127
Alignment:
Q  21 taagctactttgtggaatttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctcccagtctg 107  Q
    |||||||| |||  ||| |||||||| ||||||||||| |||||||||| | | |||||| ||||||||||||  ||||||| ||||    
T  11619213 taagctacgttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataaattctcccaatctg 11619127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 39967955 - 39968013
Alignment:
Q  41 atgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctc 99  Q
    |||||||||||||||||| ||||||||||||||  |||||  |||||||||||| ||||    
T  39967955 atgaaaataagttgaaaacagcttatgaacaatgccataagctgttttcataagttctc 39968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 27708834 - 27708802
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaaca 71  Q
    |||||||||||||||||||||||||||||||||    
T  27708834 ttatgaaaataagttgaaaatagcttatgaaca 27708802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 33678816 - 33678876
Alignment:
Q  42 tgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataagctctccca 102  Q
    ||||||||||||||||| | || ||||||||| | |||| ||||||||||||| |||||||    
T  33678816 tgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataagttctccca 33678876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 15740448 - 15740394
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    ||||||||||||||| |||| ||||||||||| || |||||| |||||||||||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaac-atgtcataagttgttttcataag 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 34035954 - 34036005
Alignment:
Q  43 gaaaataagttgaaaatagcttatgaacaatttcataacttgttttcataag 94  Q
    |||||||||||||||| | |||||||||||| |||||| || ||||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataag 34036005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 3928047 - 3927998
Alignment:
Q  39 ttatgaaaataagttgaaaatagcttatgaacaatttcataacttgtttt 88  Q
    |||||||||||||||||||| |||||||||| | | |||||| |||||||    
T  3928047 ttatgaaaataagttgaaaaaagcttatgaaaattgtcataaattgtttt 3927998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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