View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_high_16 (Length: 242)
Name: NF3607_high_16
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48085008 - 48084784
Alignment:
| Q |
1 |
cattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatgcagct |
100 |
Q |
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| T |
48085008 |
cattctatatgcatcagcagcaacaaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaggatgcagct |
48084909 |
T |
|
| Q |
101 |
ctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48084908 |
ctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctac |
48084809 |
T |
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| Q |
201 |
gagctcccaaatcataaagcctctg |
225 |
Q |
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| T |
48084808 |
gagctcccaaatcataaagcctctg |
48084784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 35376574 - 35376779
Alignment:
| Q |
11 |
gcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatgcagctctctcaagtt |
110 |
Q |
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|||| |||||||| ||||| ||||| ||||||||| ||| ||| | ||||||| || |||||||| ||||| ||||| || ||||||||| | |||| |
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| T |
35376574 |
gcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgagtt |
35376673 |
T |
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| Q |
111 |
ccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaa |
210 |
Q |
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| T |
35376674 |
ccacatcacaatcaccatttctacttc---tcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaagaaccttacgacctcccaa |
35376770 |
T |
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| Q |
211 |
atcataaag |
219 |
Q |
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||||||||| |
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| T |
35376771 |
atcataaag |
35376779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 35358140 - 35358207
Alignment:
| Q |
158 |
ggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaaatcataaagcctctg |
225 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
35358140 |
ggtgcacaccccattggtcctgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctg |
35358207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 35354413 - 35354477
Alignment:
| Q |
143 |
atagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcc |
207 |
Q |
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||||||||| ||||||| ||||| |||||||| |||||||| | || ||||||||||| ||||| |
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| T |
35354413 |
atagctaatgctgctggagcacaacccattggacctgttcctgacaccagaaccctacgtgctcc |
35354477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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