View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3607_high_3 (Length: 516)

Name: NF3607_high_3
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3607_high_3
NF3607_high_3
[»] chr7 (6 HSPs)
chr7 (1-506)||(48085085-48085571)
chr7 (155-200)||(48102491-48102536)
chr7 (130-194)||(1809526-1809590)
chr7 (54-149)||(48078011-48078106)
chr7 (53-196)||(48093140-48093283)
chr7 (53-113)||(13324606-13324666)
[»] chr1 (3 HSPs)
chr1 (52-206)||(35376267-35376421)
chr1 (127-207)||(35357711-35357791)
chr1 (128-188)||(35364521-35364581)
[»] chr6 (1 HSPs)
chr6 (130-197)||(7385568-7385635)
[»] chr4 (1 HSPs)
chr4 (53-167)||(6339168-6339282)
[»] chr5 (1 HSPs)
chr5 (53-113)||(5666479-5666539)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 48085085 - 48085571
Alignment:
Q  1 tttgactttgaccaactctatctatatatgttatgtattgaattgggctt-gacaggatttgcaacatcaaaggtagcatgctgtggacaagggccatac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085085 tttgactttgaccaactctatctatatatgttatgtattgaattgggctttgacaggatttgcaacatcaaaggtagcatgctgtggacaagggccatac 48085184  T
Q  100 aatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48085185 aatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgctttttgggatgcattccatccatctgaaaaggcaaacaaaa 48085284  T
Q  200 tcatagtcaaccaaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatggccttagattccaggacttgatcaatccatcc 299  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085285 tcatagtcaaccgaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatggccttagattccaggacttgatcaatccatcc 48085384  T
Q  300 aagacatttggttaatgnnnnnnngttagtttatgtgtgtattttctttatctgtgtccctttaatttatccattaatcttttgttttgtattccatagc 399  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||    
T  48085385 aagacatttggttaatgtttttttgttagtttatgtgtgtattttctttatctgtgtc--------------------cttttgttttgtattccatagc 48085464  T
Q  400 tagtggtttgtcatgccaagttcttgagtactggttttcccactcaaattgtcagtaataaaatgtcttcctttgattcaatcctagtgcaaacatttct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48085465 tagtggtttgtcatgccaagttcttgagtactggttttcccactcaaattgtcagtaataaaatgtcttcctttgtttcaatcctagtgcaaacatttct 48085564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 48102491 - 48102536
Alignment:
Q  155 atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48102491 atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat 48102536  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 1809526 - 1809590
Alignment:
Q  130 aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaa 194  Q
    ||||||||||| ||||||||  |  ||| |||||||||| |||||||||||||||||||||||||    
T  1809526 aacttgtgccctaacagagacttgtatgtattttgggatccattccatccatctgaaaaggcaaa 1809590  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 48078011 - 48078106
Alignment:
Q  54 aggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagaga 149  Q
    ||||||||| |||||||| || ||||| ||||| ||||| || ||||||||  |||| || ||||| ||||| || ||| | ||||||||||||||    
T  48078011 aggatttgccacatcaaaagttgcatgttgtggtcaaggaccctacaatgggattggactatgtactccagcatccaacatatgcccaaacagaga 48078106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 48093140 - 48093283
Alignment:
Q  53 caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaact 152  Q
    |||||||||  |||||| || ||||||| ||||| ||||| || ||||||||||||||||| || ||||||   || || || ||||| ||| | ||       
T  48093140 caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggctatgcacaccactatctaatttatgccctaaccgtgacga 48093239  T
Q  153 taatgcattttgggatgcattccatccatctgaaaaggcaaaca 196  Q
      ||||||||||||||||||| ||||| || |||||||| ||||    
T  48093240 atatgcattttgggatgcatttcatccttcagaaaaggctaaca 48093283  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 13324666 - 13324606
Alignment:
Q  53 caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggct 113  Q
    |||||||||  |||||| || ||||||| ||||| ||||| || |||||||||||||||||    
T  13324666 caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggct 13324606  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 35376421 - 35376267
Alignment:
Q  52 acaggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaac 151  Q
    ||||||||||  ||||||||| |||| || ||||||||||| || ||||||||  |||| || || |||||    ||||||||||||| |||  |||| |    
T  35376421 acaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagacc 35376322  T
Q  152 ttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagt 206  Q
    || |||||||||||||| ||||||||||||||||||| || | || |||||||||    
T  35376321 tttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagt 35376267  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 35357791 - 35357711
Alignment:
Q  127 tcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtc 207  Q
    ||||| |||||||||||  || | ||| ||||||||||||||||||| |||||||||||||| || | || ||||||||||    
T  35357791 tcaaaattgtgcccaaatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtc 35357711  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 35364581 - 35364521
Alignment:
Q  128 caaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaa 188  Q
    |||||||||||| |||  |||| ||  |||||||||||||| || ||||||||||||||||    
T  35364581 caaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaa 35364521  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 7385635 - 7385568
Alignment:
Q  130 aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaa 197  Q
    ||||||||| |||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  7385635 aacttgtgctcaaatagagacttaaatgcattttgggatgcattccatccatctgaaaaggcaaacaa 7385568  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 6339282 - 6339168
Alignment:
Q  53 caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaact 152  Q
    ||||||||| |||||||||   |||||| ||||| ||||| |||| ||||||| |||| || ||||| ||||| || ||||||||||| || || || ||    
T  6339282 caggatttgaaacatcaaaacaagcatgttgtggtcaaggaccattcaatggagttggactatgtactccagcttctaacttgtgccctaatagggatct 6339183  T
Q  153 taatgcattttggga 167  Q
    | |||||||||||||    
T  6339182 ttatgcattttggga 6339168  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 5666539 - 5666479
Alignment:
Q  53 caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggct 113  Q
    |||||||||  |||||| || ||||||| ||||| ||||| || |||||||||||||||||    
T  5666539 caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggct 5666479  T

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