View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_low_11 (Length: 278)
Name: NF3607_low_11
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_11 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 4314649 - 4314914
Alignment:
| Q |
7 |
cttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaaca |
106 |
Q |
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| T |
4314649 |
cttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaagaaacatgatctcttttttattcaaactatatgcaaca |
4314748 |
T |
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| Q |
107 |
aaaaatatataattcatgttacattgttgaattaaaacaaatatacattgtagacaaaattatggagaactttatcttcatacctcgttggacacaatat |
206 |
Q |
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| T |
4314749 |
aataatatataattcatgttacattgttgaattaaaacaaatatacattgcagacaaaattatggagaactttatcttcatacctcgttggatgcaatat |
4314848 |
T |
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| Q |
207 |
catccattagcctgcaaatgataatagcagcattgatcatttttggcccatttgatacccacttga |
272 |
Q |
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| T |
4314849 |
catccattagcctgcaaaggataatagcagcattgatcatttttattccatttgatacccacttga |
4314914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 25794273 - 25794182
Alignment:
| Q |
7 |
cttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaactat |
98 |
Q |
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| T |
25794273 |
cttcttgaatggcagcttccctagacacatcatattctttcatataacactccaggaatgaggaaacatgttctcttttttgttcaaactat |
25794182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 25794093 - 25794001
Alignment:
| Q |
186 |
atacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatttgatacccacttgatgatgt |
278 |
Q |
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| T |
25794093 |
atacctcattggacacaatgtcatccattagcctgcaaagtacaacagaagcattaagaatttttggctcatttgatatccacttgaagatgt |
25794001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 31201590 - 31201317
Alignment:
| Q |
7 |
cttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaact--atatgcaa |
104 |
Q |
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| T |
31201590 |
cttcttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgaggtaacatgttctctttcttgttcaaactatatatccaa |
31201491 |
T |
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| Q |
105 |
caaaaaata--tataattcatg-ttacattgttgaattaaaacaaatatacattgtagacaaaattatggagaactttatcttcatacctcgttggacac |
201 |
Q |
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| T |
31201490 |
caaataatagttttggtaaatgtttacattgtt-aattaaaacaaatat--attgtagagaaaattatttggaattttatatatgtacctcattggacac |
31201394 |
T |
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| Q |
202 |
aatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatttgatacccacttgatgatgt |
278 |
Q |
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| T |
31201393 |
aatgtcatccattaaccttccaatgataattgcagcattaataacttttggatcatttgatacccacttgaagatgt |
31201317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 41349471 - 41349568
Alignment:
| Q |
7 |
cttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaa |
104 |
Q |
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| T |
41349471 |
cttcttgaatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaa |
41349568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 41349663 - 41349749
Alignment:
| Q |
186 |
atacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatttgatacccacttga |
272 |
Q |
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| T |
41349663 |
atacctcgttggatacaatatcatccattatcctgcaaaggacaatagcagcattaataatttttgactcatttgatacccatttga |
41349749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 31161849 - 31161766
Alignment:
| Q |
22 |
cttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaac |
105 |
Q |
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| T |
31161849 |
cttccctagagacattatacttcttcatgtagcattccaagaatgaggacatatgttctcttttctgttcaaactatatacaac |
31161766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 31161614 - 31161515
Alignment:
| Q |
177 |
tttatcttcatacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatttgatacccacttgatgat |
276 |
Q |
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| T |
31161614 |
tttatatttatacctcattggatgcaatgtcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgat |
31161515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 17183186 - 17183098
Alignment:
| Q |
8 |
ttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaact |
96 |
Q |
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| T |
17183186 |
ttcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttcaaact |
17183098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 20603030 - 20603118
Alignment:
| Q |
8 |
ttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaact |
96 |
Q |
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| T |
20603030 |
ttcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact |
20603118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 20622198 - 20622236
Alignment:
| Q |
186 |
atacctcgttggacacaatatcatccattagcctgcaaa |
224 |
Q |
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| T |
20622198 |
atacctcgttggaaacaatttcatccattagcctgcaaa |
20622236 |
T |
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