View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3607_low_14 (Length: 268)
Name: NF3607_low_14
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 22904162 - 22903927
Alignment:
| Q |
19 |
cctactgtccactagcagaacccaattgaagccagaacaa-gctcggtatggaccgactctaaaa-gggtaccataagaacgagctcggtaaattacata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22904162 |
cctactgtccactagcagaacccaattatagccagaacaaagctccgtatggaccgactctaaaaagggtaccataagaacgagctcggtaaattacata |
22904063 |
T |
|
| Q |
117 |
aaagggtaccttaagaacgagctcattttcgccaagttggatagtgtacttctttctcacttgatgattcttcgctatatctg-nnnnnnngatgaatga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22904062 |
aaagggtaccttaagaacgagctcattttcgccaagttggatagtgtacttctttctcacttgatgattcttcgctatatctgaaaaaaaagatgaatga |
22903963 |
T |
|
| Q |
216 |
ttttgaaggaattaggagaaaagtgagtaaagaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22903962 |
ttttgaaggaattaggagaaaagtgtgtaaagaaat |
22903927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University