View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_low_22 (Length: 237)
Name: NF3607_low_22
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 21223649 - 21223861
Alignment:
| Q |
9 |
tatttaatcatttatttcgcaataagagaaagtgaggtggaaggaattgtgatagaaagtgattacttggaatgcacctctaccactaagcgtatgtttg |
108 |
Q |
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| T |
21223649 |
tatttaatcatttatttcgcgataagagaaagtgaggtggaaggaattgtgatagaaagtgattacttggaatgcacctctaccattaagcgtatgtttg |
21223748 |
T |
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| Q |
109 |
attacgcgtttagccacctctaacaggtgtttttaccggtaaacgtggtttttgtcccttgtaaacatgtttggttatttcacattagaattgattctgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21223749 |
attacgcgtttagccacctctaacaggtgtttttaccggtaaacgtggtttttgtcccttgtaaacatgtttggttatttcac-caagaattgattctgt |
21223847 |
T |
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| Q |
209 |
ctcccaaactccat |
222 |
Q |
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|||||||||||||| |
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| T |
21223848 |
ctcccaaactccat |
21223861 |
T |
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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 4290516 - 4290635
Alignment:
| Q |
103 |
tgtttgattacgcgtttagccacctctaacaggtgtttttaccggtaaacgtggtttttgtcccttgtaaacatgtttggttattt-cacattagaattg |
201 |
Q |
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|||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||| |||||||||||||| ||| ||| |||| || |
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| T |
4290516 |
tgtttgtttacgcgtttagccacctcaaacgcgtgtttttaccggtaatcgtggtttttgtcacttgcaaacatgtttggtttttttcacca-agaactg |
4290614 |
T |
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| Q |
202 |
attctgtctcccaaactccat |
222 |
Q |
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| T |
4290615 |
gttctgtctcccaaactccat |
4290635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 16159684 - 16159567
Alignment:
| Q |
98 |
gcgtatgtttgattacgcgtttagccacctctaacaggtgtttttaccggtaaacgtggtttttgtcccttgtaaacatgtttggttatttca-cattag |
196 |
Q |
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| T |
16159684 |
gcgtctgtttggttacgcgtttagccacctcaaacgcgcatttttattggtaaacatggtttttgtcccgtgcaaacatttttggttttttcatca--ag |
16159587 |
T |
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| Q |
197 |
aattgattctgtctcccaaa |
216 |
Q |
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| T |
16159586 |
aattgattctgtctcccaaa |
16159567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 24035598 - 24035692
Alignment:
| Q |
95 |
taagcgtatgtttgattacgcgtttagccacctctaacaggtgtttttaccggtaaacgtggtttttgtcccttgtaaacatgtttggttatttc |
189 |
Q |
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| T |
24035598 |
taagcctatgtttagttacacgtttagacacctcaaacatgcgtttttattagttaacgcgatttttgtcccttgcaaacatgtttggttttttc |
24035692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 44757526 - 44757593
Alignment:
| Q |
30 |
ataagagaaagtgaggtggaaggaattgtgatagaaagtgattacttggaatgcacctctaccactaa |
97 |
Q |
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| T |
44757526 |
ataagagaaagtgaggtggaaggaattgtaatagaaagtgattactcggaatgcagctctaccactaa |
44757593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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