View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_low_4 (Length: 400)
Name: NF3607_low_4
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 2947038 - 2946639
Alignment:
| Q |
1 |
aaaaagtaatgtagttagcttctttagcaagtactataaataaacattcaagtaacttagatgctagtctatcatgtccattcttttacaattttgtgat |
100 |
Q |
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| T |
2947038 |
aaaaagtaatgtagttagcttctttagcaagtactataaataaacatttaagtaacttagatgctagtctatcatgtccattcttttacaattttgtgat |
2946939 |
T |
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| Q |
101 |
ccaaaaagaaatggtctacagggaatggaaccgagtggtgctaccaaacatttcctggcttttggtggaggcatgagattttgtgttgggacagaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946938 |
ccaaaaagaaatggtctacagggaatggaaccgagtggtgctaccaaacatttcctggcttttggtggaggcatgagattttgtgttgggacagaatttg |
2946839 |
T |
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| Q |
201 |
ctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggtaataagcaatgtcatgcatggaaagagactttaaactgaaacaatgtac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2946838 |
ctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggtaataagcaatgtcatgcatggaaagagactttaaactgaaacaacgtac |
2946739 |
T |
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| Q |
301 |
cttctttaacgcttgaatttaatttagaatgcggagtagtctctttaacgtctgaatatttcaggtggcgacccatcaaaggagggaatattgttcgaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946738 |
cttctttaacgcttgaatttaatttagaatgcggagtagtctctttaacgtctgaatatttcaggtggcgacccatcaaaggagggaatattgttcgaac |
2946639 |
T |
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