View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_low_5 (Length: 381)
Name: NF3607_low_5
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 38 - 366
Target Start/End: Complemental strand, 10731438 - 10731113
Alignment:
| Q |
38 |
tatagtgtggttaacacttcttctagcaaaatgttgctaaagttttcatatnnnnnnnnnnnntgtttctactaaagttgatgttgaagccgtgtcggtg |
137 |
Q |
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| T |
10731438 |
tatagtgtggttaaaacttcttctagcaaaatgttgctaaagttttcatataaaaaaaaaaa-tgtttctactaaagttgatgttgaagccgtgtcggtg |
10731340 |
T |
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| Q |
138 |
taaatagtaaacgtagtgggtctcaattaaatagagaaagataatggaaccaacgtagtgaaagcaattagatgtgacccaaacttgtcccatttccatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10731339 |
taaatagtaaacgtagtgggtctcaattaaatagagaaagataatggaaccaacgtagtgaaagcaa---gatgtgacccaaacttgtcccatttccatt |
10731243 |
T |
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| Q |
238 |
atctttgaatttcatcattgttgaaatcgaaaatgttgattgctccttaaggtcaatccattcaatgactttgttttcttctccctc-ttttccatttaa |
336 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10731242 |
atctttgactttcatcattgttgaaagcgaaaatgttgattgctccttaaggtcaatccattcaatgactttgttttcttctccctctttttccatttaa |
10731143 |
T |
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| Q |
337 |
attttatggatttggtgcatgtgaacttcc |
366 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10731142 |
attttatggatttggtgcatgtgaacttcc |
10731113 |
T |
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