View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3607_low_6 (Length: 332)
Name: NF3607_low_6
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3607_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 25933090 - 25933372
Alignment:
| Q |
30 |
ctacacccccaccaccatcaacaacaactgatctaatcactagaaattcatgaacccaaaacaacaaaagctataattccttaaacctatnnnnnnnnta |
129 |
Q |
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| T |
25933090 |
ctacacctccactaccatcaacaacaacttatctaatcaccagaaattcatgaacccataacaacaaaagctctaattccttaaacctataaaaaag--a |
25933187 |
T |
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| Q |
130 |
tgaatccctgttttattttttctttctcccatcaaatgaacacaaaatccagttcaaattgaatttcctagaaagcgacggacaccacgtgaatcaaatg |
229 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
25933188 |
tgaatccatgtttaattttttctttctcccatcaaatgaacacaaaacccagttcaaattgaatttcctagaaagtgatggacaccacgtgaatcaaatg |
25933287 |
T |
|
| Q |
230 |
gaagatatgggc-nnnnnnnagagaggaagatatggactttgataatgtcaaaactgaaattccaagacagttttgagaatattt |
313 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933288 |
gaagatatgggcttttttttagagaggaagatatggactttgataatgtcaaaactgaaattccaagacagttttgagaatattt |
25933372 |
T |
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