View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3607_low_9 (Length: 290)

Name: NF3607_low_9
Description: NF3607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3607_low_9
NF3607_low_9
[»] chr4 (13 HSPs)
chr4 (130-272)||(7875473-7875615)
chr4 (130-272)||(7871735-7871877)
chr4 (159-237)||(21224144-21224222)
chr4 (198-272)||(10034226-10034300)
chr4 (155-237)||(21232263-21232345)
chr4 (159-237)||(21225697-21225775)
chr4 (155-206)||(7890267-7890318)
chr4 (159-209)||(6547320-6547370)
chr4 (155-216)||(6589450-6589511)
chr4 (155-216)||(6756958-6757019)
chr4 (166-216)||(6726426-6726476)
chr4 (155-216)||(6771699-6771760)
chr4 (155-216)||(6814267-6814328)
[»] chr7 (2 HSPs)
chr7 (158-216)||(36215321-36215379)
chr7 (169-214)||(34727174-34727219)
[»] chr6 (11 HSPs)
chr6 (168-217)||(5395557-5395606)
chr6 (169-217)||(5068514-5068562)
chr6 (169-217)||(5094555-5094603)
chr6 (168-216)||(5183391-5183439)
chr6 (169-217)||(5348889-5348937)
chr6 (158-217)||(5424267-5424326)
chr6 (169-214)||(5148399-5148444)
chr6 (169-218)||(5368973-5369022)
chr6 (169-217)||(5104312-5104360)
chr6 (169-217)||(5158941-5158989)
chr6 (169-217)||(5342208-5342256)
[»] chr5 (1 HSPs)
chr5 (169-214)||(8876318-8876363)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 7875473 - 7875615
Alignment:
Q  130 agtaaatccaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875473 agtaaattcaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 7875572  T
Q  230 tcatcaaagtttgttcacaactttccaattatgatatcgttgg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7875573 tcatcaaagtttgttcacaactttccaattatgatatcgttgg 7875615  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 7871735 - 7871877
Alignment:
Q  130 agtaaatccaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871735 agtaaatccaaaatattcaacattgattacatcatctatgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 7871834  T
Q  230 tcatcaaagtttgttcacaactttccaattatgatatcgttgg 272  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  7871835 tcatcaaagtttgttcacagctttccaattatgatatcgttgg 7871877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 21224222 - 21224144
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaa 237  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| | | |||||||| ||||||||||||||||||    
T  21224222 catcatctttgtccatcccaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaatcatcaaa 21224144  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 10034300 - 10034226
Alignment:
Q  198 caaggaatatttctttctcattaccatctaaatcatcaaagtttgttcacaactttccaattatgatatcgttgg 272  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| || |||||  ||||||||||||||||    
T  10034300 caaggaatatttctttctcattgtcatctaaatcatcaaagtttgttctcagctttcgcattatgatatcgttgg 10034226  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 21232345 - 21232263
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaa 237  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||| | | |||||||| ||||||||||| ||||||    
T  21232345 attacatcatctttgtccatcctaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaattatcaaa 21232263  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 21225775 - 21225697
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaa 237  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||| | | |||||||| ||||||||||| ||||||    
T  21225775 catcatctttctccatcccaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaattatcaaa 21225697  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 7890267 - 7890318
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaata 206  Q
    |||||||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  7890267 attacatcatctttgtgcatcccaataaataaagtagctattttaaggaata 7890318  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6547320 - 6547370
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatattt 209  Q
    |||||| |||||||||||||||||| |||  ||||||||||||||||||||    
T  6547320 catcatttttgtccatcccaataaagaaacaagctatatcaaggaatattt 6547370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6589450 - 6589511
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||| | |||||||||||||||||| |||  ||| |||||||||||||||| ||||||    
T  6589450 attacatcctttttgtccatcccaataaagaaacaagcaatatcaaggaatatttgtttctc 6589511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6757019 - 6756958
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||| | ||||| |||||||||| |||  |||||||||||||||||||| ||||||    
T  6757019 attacatcatttctgtccttcccaataaagaaacaagctatatcaaggaatatttgtttctc 6756958  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 6726476 - 6726426
Alignment:
Q  166 tttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||||||||||| |||  |||||||||||| ||||||| ||||||    
T  6726476 tttgtccatcccaataaagaaacaagctatatcaagaaatatttgtttctc 6726426  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6771760 - 6771699
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||| | |||||| | ||||||||| |||  |||||||||||||||||||| ||||||    
T  6771760 attacatcctttttgtctaccccaataaagaaacaagctatatcaaggaatatttgtttctc 6771699  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6814328 - 6814267
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||| |  |||| |||||||||| |||  |||||||||||||||||||| ||||||    
T  6814328 attacatcatttcggtccctcccaataaagaaacaagctatatcaaggaatatttgtttctc 6814267  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 36215321 - 36215379
Alignment:
Q  158 acatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    ||||||| | |||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  36215321 acatcatttctgtccatcccaataaagaaacaagctatgtcaaggaatatttctttctc 36215379  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 34727174 - 34727219
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  ||| |||||||||||||||||||||    
T  34727174 gtccatcccaataaagaaaaaagcaatatcaaggaatatttctttc 34727219  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 5395606 - 5395557
Alignment:
Q  168 tgtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    |||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5395606 tgtccatcccaataaaaaaacaagctatgtcaaggaatatttctttctca 5395557  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5068514 - 5068562
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5068514 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttctca 5068562  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5094603 - 5094555
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||||    
T  5094603 gtccatcccaataaagaaacaagctacatcaaggaatatttctttctca 5094555  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 5183391 - 5183439
Alignment:
Q  168 tgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  5183391 tgtccatcccaataaagaaacaagctatgtcaaggaatatttctttctc 5183439  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5348937 - 5348889
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5348937 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttctca 5348889  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 5424326 - 5424267
Alignment:
Q  158 acatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||| | ||||||| |||||||| |||  |||||| |||||||||||||||||||||    
T  5424326 acatcatttctgtccattccaataaagaaacaagctatgtcaaggaatatttctttctca 5424267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 5148399 - 5148444
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  |||||| ||||||||||||||||||    
T  5148399 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttc 5148444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 5369022 - 5368973
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctcat 218  Q
    |||| |||||||||| |||  ||||| |||||||||||||||||||||||    
T  5369022 gtccttcccaataaagaaacaagctacatcaaggaatatttctttctcat 5368973  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5104312 - 5104360
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  ||||| ||| ||||||||||||||||||    
T  5104312 gtccatcccaataaagaaacaagctacatcgaggaatatttctttctca 5104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5158941 - 5158989
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||| ||||| |||  ||||| ||||||||||||||||||||||    
T  5158941 gtccatccctataaagaaacaagctacatcaaggaatatttctttctca 5158989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5342256 - 5342208
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| ||||| |||||||||||||||    
T  5342256 gtccatcccaataaagaaacaagctatgtcaagaaatatttctttctca 5342208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 8876363 - 8876318
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  |||||| ||||||||||||||||||    
T  8876363 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttc 8876318  T

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