View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_high_17 (Length: 250)
Name: NF3608_high_17
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39677342 - 39677105
Alignment:
| Q |
1 |
cagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtatccaga |
100 |
Q |
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| T |
39677342 |
cagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtatccaga |
39677246 |
T |
|
| Q |
101 |
ccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaattt-ggacaattttatagttgtatacttgtatttgggaacctct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
39677245 |
ccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaacctct |
39677146 |
T |
|
| Q |
200 |
gtcgatatacaaaagcccaaagtttctaatctaacattcat |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677145 |
gtcgatatacaaaagcccaaagtttctaatctaacattcat |
39677105 |
T |
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