View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_high_2 (Length: 489)
Name: NF3608_high_2
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 34261647 - 34261186
Alignment:
| Q |
9 |
agcaaaggaatcaaaaatggtcgtcgatctaatcgagaaaagaagattgcattgttacaagatgtactttgaatcttcactcaaatgaataagaaatttt |
108 |
Q |
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||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34261647 |
agcaaaggaatgaaaactggtcgtccatctaatcgagaaaagaagattgcattgttacaagatgtactttgaatcttcactcaaatgaataagaattttt |
34261548 |
T |
|
| Q |
109 |
ttgttattttcttcatacaaaatagtgatgttttcaaagctttggtttcaggtagataagttgaagaggaagctaagacatgaagagaatgttcatagag |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34261547 |
gtgttattttcttcatacaaaatagtgatgttttgaaagctttggtttcaggtagataagttgaagaggaagctaagacatgaagagaatgttcacagag |
34261448 |
T |
|
| Q |
209 |
ctttagaaagagcatttacaagacctttaggatctttgcctcgtcttcctccttatcttcctccatatgttagtcactctctcttctaatcgaagaattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261447 |
ctttagaaagagcatttacaagacctttaggatctttgcctcgtcttcctccttatcttcctccatatgttagtcactctctcttctaatcgaagaattt |
34261348 |
T |
|
| Q |
309 |
agtatatatgtttgaaatcacattgagtttgacgaaatcaagatgacacagtaactgtgttgatgccaacttttttgtcaaaatcacagtgatacgctgt |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
34261347 |
agtatatatgtttgaaatcacagtgagtttgacgaaatcaggatgacactgtaactgtgttgatgccaacttttttgtcaaattcacagtgacacgctgt |
34261248 |
T |
|
| Q |
409 |
aattctgtcaaatataccgtcaattctaacatgcactctgacaatgagtttgttgagtttga |
470 |
Q |
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| T |
34261247 |
aattctgtcaaatataccgtcaactcaaacatgcactctgacaatgagtttgttgagtttga |
34261186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 6565394 - 6565503
Alignment:
| Q |
157 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcatagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
256 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||| || | | |||||||||| |
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| T |
6565394 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
6565493 |
T |
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| Q |
257 |
ctccttatct |
266 |
Q |
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|||||||||| |
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| T |
6565494 |
ctccttatct |
6565503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 46641766 - 46641638
Alignment:
| Q |
154 |
tttcaggtagataagttgaagaggaagctaagacatgaagagaatgttcatagagctttagaaagagcatttacaagacctttaggatctttgcctcgtc |
253 |
Q |
| |
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|||||||| || | |||||||| |||||| || ||||||||||| |||| | || || |||||||| || | || ||||| ||| | || ||||||| |
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| T |
46641766 |
tttcaggttgacaggttgaagaagaagcttaggcatgaagagaacattcacaaggcattggaaagagctttgaataggcctttgggagccttacctcgtc |
46641667 |
T |
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| Q |
254 |
ttcctccttatcttcctccatatgttagt |
282 |
Q |
| |
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||||||||||||| ||||| ||||||||| |
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| T |
46641666 |
ttcctccttatctccctccctatgttagt |
46641638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 6228987 - 6229040
Alignment:
| Q |
229 |
agacctttaggatctttgcctcgtcttcctccttatcttcctccatatgttagt |
282 |
Q |
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|||||||||||| |||| ||||| ||||||||||| || ||||| ||||||||| |
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| T |
6228987 |
agacctttaggagctttacctcgacttcctccttacctacctccttatgttagt |
6229040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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