View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3608_high_5 (Length: 427)
Name: NF3608_high_5
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 1481990 - 1481582
Alignment:
| Q |
1 |
tgggaacgtgtcttcagattgcttaaggatgaaggagacgaccaccactggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481990 |
tgggaacgtgtcttcagattgcttaaggatga------cgaccacc---ggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccg |
1481900 |
T |
|
| Q |
101 |
tcaccaacagttacaaattctctctcactatctggcattcaacccgttaccttccacgcctcctacaaaggttcaccaatctcatctctttcgacctt-c |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
1481899 |
tcaccaacagttacaaattctctctcactatctggcattcaacccgttaccttccacgcctcctacaaaggttcaccaatctcacctcttttgacctttc |
1481800 |
T |
|
| Q |
200 |
cttctactactgtaacctcaatgcgcttctcacccaaatctcctgtttcccattgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgct |
299 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481799 |
cttctactactttaacctcgatgcgcttctcacccaaatctcctgtttcccattgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgct |
1481700 |
T |
|
| Q |
300 |
aatggcttgcgagcttaacctcactcgtttgttccaacctaaattctattaatagcagtaatagaattagaggctctttcattggcactcttcaaactcc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481699 |
aatggcttgcgagcttaacctcactcgtctgttccaacctaaattctattaatagcagtaatagaattagaggctctttcattggcactcttcaaactcc |
1481600 |
T |
|
| Q |
400 |
gcaagcttaatctctctg |
417 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1481599 |
gcaagcttaatctctctg |
1481582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 8186539 - 8186582
Alignment:
| Q |
369 |
gaggctctttcattggcactcttcaaactccgcaagcttaatct |
412 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
8186539 |
gaggctctttcattggcacttttcaaacttcgcaaggttaatct |
8186582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 53760237 - 53760277
Alignment:
| Q |
244 |
gtttcccattgaaactcacatcgctcaatatctcaaaccaa |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
53760237 |
gtttcccattgaaactcacatcactcaatctctccaaccaa |
53760277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 315
Target Start/End: Original strand, 5766360 - 5766620
Alignment:
| Q |
62 |
tgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactatctggcattcaacc---cgttaccttccacg |
158 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||||||| | || || || | | ||| || | |
|
|
| T |
5766360 |
tgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccagccctacctgtcctccctgg |
5766459 |
T |
|
| Q |
159 |
cctcctacaaaggttcaccaatctcatctctttcgacct-tccttctactactgtaacctcaatgcgcttctcacccaaatctcctgtttccca---ttg |
254 |
Q |
| |
|
||| |||||||||||||||| |||| ||| ||||||| || | ||| ||| || |||| |||| ||||| || |||||||| | |||||| ||| |
|
|
| T |
5766460 |
cctattacaaaggttcaccaaactcacctccctcgacctctcgtactattacggtgacctagatgcacttcttactcaaatctctagcttcccaatgttg |
5766559 |
T |
|
| Q |
255 |
aaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt |
315 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
5766560 |
aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt |
5766620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 315
Target Start/End: Complemental strand, 14004444 - 14004184
Alignment:
| Q |
62 |
tgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactatctggcattcaacc---cgttaccttccacg |
158 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||||||| | || ||||| | | ||| || | |
|
|
| T |
14004444 |
tgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctgg |
14004345 |
T |
|
| Q |
159 |
cctcctacaaaggttcaccaatctcatctctttcgacct-tccttctactactgtaacctcaatgcgcttctcacccaaatctcctgtttccca---ttg |
254 |
Q |
| |
|
||| |||||||||||||||| |||| ||| ||||||| || | ||| || || ||||| |||| ||||| || |||||||| | |||||| || |
|
|
| T |
14004344 |
cctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttc |
14004245 |
T |
|
| Q |
255 |
aaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt |
315 |
Q |
| |
|
|||||||||||||||||| | || ||||||| || |||||| |||||||| |||||||||| |
|
|
| T |
14004244 |
aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctt |
14004184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 34935736 - 34935814
Alignment:
| Q |
53 |
aacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactat |
131 |
Q |
| |
|
||||||||||| |||||||||| ||| | || |||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34935736 |
aacgctacatggagtctctctctgtctcctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactat |
34935814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 5766789 - 5766838
Alignment:
| Q |
367 |
tagaggctctttcattggcactcttcaaactccgcaagcttaatctctct |
416 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
5766789 |
tagaggctctttcattagcactcatcaaactccgcaaggttaatctctct |
5766838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 14004015 - 14003966
Alignment:
| Q |
367 |
tagaggctctttcattggcactcttcaaactccgcaagcttaatctctct |
416 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
14004015 |
tagaggctctttcattagcactcatcaaactccgcaaggttaatctctct |
14003966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 9581808 - 9581769
Alignment:
| Q |
238 |
tctcctgtttcccattgaaactcacatcgctcaatatctc |
277 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9581808 |
tctcttgtttcccattgaaactcacatcgctcaatctctc |
9581769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 9587379 - 9587340
Alignment:
| Q |
238 |
tctcctgtttcccattgaaactcacatcgctcaatatctc |
277 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9587379 |
tctcttgtttcccattgaaactcacatcgctcaatctctc |
9587340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 28695701 - 28695750
Alignment:
| Q |
367 |
tagaggctctttcattggcactcttcaaactccgcaagcttaatctctct |
416 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
28695701 |
tagaggctatttcattgccacttttcaaactctgcaaggttaatctctct |
28695750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University