View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_high_8 (Length: 336)
Name: NF3608_high_8
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 116 - 315
Target Start/End: Original strand, 2017625 - 2017825
Alignment:
| Q |
116 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatctcgtcgaggcagatcatcatcatcaaccattgatttcgcggaatgtgaatg-gn |
214 |
Q |
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| T |
2017625 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatcgcgtcgcggcagatcatcatcatcaaccattgatttcgcggaatgtgaatgaaa |
2017724 |
T |
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| Q |
215 |
nnnnnnntgtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgatgaacaaataatttcgtaatttagggatgaaatgt |
314 |
Q |
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| T |
2017725 |
aaaaaaaagtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgaggaagaaataatttcgtaatttagggatgaaatgt |
2017824 |
T |
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| Q |
315 |
g |
315 |
Q |
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| T |
2017825 |
g |
2017825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 2017236 - 2017324
Alignment:
| Q |
33 |
agttgatcatcggccgccaagaactctccatccaggttattctctatcattttttcggattcaattccaccgcaaattgcggccacaat |
121 |
Q |
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| T |
2017236 |
agttgatcatcggacgccaagaactctccatccaggttattgtctatcattttttcggattcaattccaccgcaaattgcgggcacaat |
2017324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 2020115 - 2020161
Alignment:
| Q |
233 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
279 |
Q |
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| T |
2020115 |
tgagaatgtttttgttatattttggggtaaaaaatgttaatatttga |
2020161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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