View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_low_14 (Length: 262)
Name: NF3608_low_14
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 446390 - 446159
Alignment:
| Q |
16 |
atcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgctc |
115 |
Q |
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| T |
446390 |
atcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgctc |
446291 |
T |
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| Q |
116 |
ctagataaggtactaaaaatgacccacatacctactaatgaagaaccaccaataggaattgaacacaaacacatgatgttgtttgatcctactagttaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446290 |
ctagataaggtactaaaaatgacccacatacctactaatgaagaaccactaataggaattgaacacaaacacatgatgttgtttgatcctactagttaag |
446191 |
T |
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| Q |
216 |
cttatcttcataggagacacatgatatatttt |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
446190 |
cttatcttcataggagacacatgatatatttt |
446159 |
T |
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