View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3608_low_15 (Length: 262)

Name: NF3608_low_15
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3608_low_15
NF3608_low_15
[»] chr5 (11 HSPs)
chr5 (1-254)||(28056405-28056642)
chr5 (210-245)||(3154675-3154710)
chr5 (209-249)||(7144580-7144620)
chr5 (209-245)||(19844341-19844377)
chr5 (207-249)||(41179398-41179440)
chr5 (207-244)||(17489349-17489386)
chr5 (210-243)||(38890418-38890451)
chr5 (209-249)||(582895-582935)
chr5 (207-243)||(4098624-4098660)
chr5 (209-249)||(29803228-29803268)
chr5 (209-249)||(32379957-32379997)
[»] chr8 (11 HSPs)
chr8 (209-245)||(14531624-14531660)
chr8 (209-249)||(12697741-12697781)
chr8 (209-245)||(14228710-14228746)
chr8 (209-249)||(29913567-29913607)
chr8 (211-243)||(34037520-34037552)
chr8 (209-245)||(4312551-4312587)
chr8 (209-245)||(12655925-12655961)
chr8 (209-245)||(33605110-33605146)
chr8 (204-244)||(40074855-40074895)
chr8 (209-245)||(40380284-40380320)
chr8 (209-249)||(40614218-40614258)
[»] chr1 (17 HSPs)
chr1 (197-245)||(25994948-25994996)
chr1 (207-249)||(34395947-34395989)
chr1 (209-245)||(26585205-26585241)
chr1 (209-245)||(29706735-29706771)
chr1 (210-246)||(41619060-41619096)
chr1 (207-245)||(18639736-18639774)
chr1 (209-243)||(52261342-52261376)
chr1 (200-245)||(26839376-26839421)
chr1 (207-244)||(52369144-52369181)
chr1 (209-249)||(7078528-7078568)
chr1 (201-245)||(8757550-8757594)
chr1 (209-245)||(11947798-11947834)
chr1 (209-245)||(27352633-27352669)
chr1 (209-249)||(31184284-31184324)
chr1 (209-245)||(32873344-32873380)
chr1 (209-245)||(42843376-42843412)
chr1 (209-249)||(49699780-49699820)
[»] chr2 (21 HSPs)
chr2 (210-249)||(43621976-43622015)
chr2 (209-249)||(22303206-22303246)
chr2 (205-241)||(36175742-36175778)
chr2 (209-244)||(3091744-3091779)
chr2 (201-244)||(44530715-44530758)
chr2 (209-243)||(14891112-14891146)
chr2 (209-243)||(15505178-15505212)
chr2 (205-254)||(4059372-4059421)
chr2 (209-246)||(20507618-20507655)
chr2 (199-244)||(26321730-26321775)
chr2 (199-244)||(26321898-26321943)
chr2 (209-249)||(3299133-3299173)
chr2 (209-245)||(4319772-4319808)
chr2 (209-245)||(8805233-8805269)
chr2 (200-232)||(9384369-9384401)
chr2 (209-245)||(14255305-14255341)
chr2 (209-245)||(18508081-18508117)
chr2 (209-249)||(29871380-29871420)
chr2 (209-245)||(29893613-29893649)
chr2 (209-245)||(30220842-30220878)
chr2 (209-245)||(35334523-35334559)
[»] chr7 (18 HSPs)
chr7 (209-247)||(5068653-5068691)
chr7 (207-244)||(10945023-10945060)
chr7 (209-246)||(26153649-26153686)
chr7 (210-247)||(34690954-34690991)
chr7 (209-249)||(40760796-40760836)
chr7 (215-249)||(677803-677837)
chr7 (209-247)||(2849551-2849589)
chr7 (209-239)||(10014993-10015023)
chr7 (207-249)||(11604710-11604752)
chr7 (207-245)||(37385265-37385303)
chr7 (209-246)||(30818028-30818065)
chr7 (209-249)||(12141902-12141942)
chr7 (209-249)||(22692087-22692127)
chr7 (209-245)||(29763833-29763869)
chr7 (209-241)||(36580743-36580775)
chr7 (201-245)||(37173006-37173050)
chr7 (209-245)||(38259066-38259102)
chr7 (209-249)||(47530319-47530359)
[»] chr3 (17 HSPs)
chr3 (207-249)||(16139323-16139365)
chr3 (209-247)||(21239108-21239146)
chr3 (209-245)||(1295335-1295371)
chr3 (209-249)||(36799401-36799441)
chr3 (207-249)||(35987249-35987291)
chr3 (210-243)||(30633706-30633739)
chr3 (210-243)||(49031439-49031472)
chr3 (209-249)||(7867739-7867779)
chr3 (209-245)||(20549417-20549453)
chr3 (209-249)||(22836223-22836263)
chr3 (209-245)||(26645029-26645065)
chr3 (209-249)||(37134634-37134674)
chr3 (209-245)||(43499593-43499629)
chr3 (204-244)||(47392461-47392501)
chr3 (209-245)||(50559244-50559280)
chr3 (209-245)||(50652391-50652427)
chr3 (209-245)||(51137068-51137104)
[»] chr6 (6 HSPs)
chr6 (207-248)||(3401085-3401126)
chr6 (207-244)||(29172991-29173028)
chr6 (209-244)||(736853-736888)
chr6 (205-243)||(29467364-29467402)
chr6 (209-245)||(27334861-27334897)
chr6 (209-245)||(27395601-27395637)
[»] chr4 (20 HSPs)
chr4 (209-254)||(12074475-12074520)
chr4 (209-254)||(24088587-24088632)
chr4 (207-244)||(34114150-34114187)
chr4 (210-246)||(21152655-21152691)
chr4 (209-249)||(36444423-36444463)
chr4 (209-245)||(44626608-44626644)
chr4 (209-244)||(52430880-52430915)
chr4 (209-244)||(52632159-52632194)
chr4 (209-239)||(32464642-32464672)
chr4 (207-249)||(45922007-45922049)
chr4 (204-245)||(32303317-32303358)
chr4 (209-246)||(39449176-39449213)
chr4 (209-245)||(3475872-3475908)
chr4 (209-249)||(8455864-8455904)
chr4 (209-249)||(11012144-11012184)
chr4 (209-249)||(19879776-19879816)
chr4 (209-245)||(31995948-31995984)
chr4 (209-245)||(32901332-32901368)
chr4 (209-249)||(44272838-44272878)
chr4 (209-249)||(47014942-47014982)
[»] scaffold0154 (1 HSPs)
scaffold0154 (209-244)||(4318-4353)
[»] scaffold0662 (1 HSPs)
scaffold0662 (209-249)||(1081-1121)
[»] scaffold0252 (1 HSPs)
scaffold0252 (209-249)||(8003-8043)
[»] scaffold0041 (1 HSPs)
scaffold0041 (207-243)||(34409-34445)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28056642 - 28056405
Alignment:
Q  1 cttaaagaccaatattgtgatcatctaagagcttttctgttgataaatttatttatatttcaaacttgatatttgttgtcgttaaataacacaaattaat 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  28056642 cttaaagaccaatattgtgatcatctaagagcttttcttttgataaatttatt-atatttcaaacttgatatttgttatcgttaaaaaacacaaattaat 28056544  T
Q  101 catcagagaggttgacggtggttgatgtctcttgtggtagtggttgtcggaggggaaaggtacatgcaaaagaccatctattaccataatcagtctaaat 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||               | ||||||||    
T  28056543 catcagagaggttgatggtggttgatgtctcttgtggtagtggttgtcggaggggaaaggtatatgcaaaagacc---------------cggtctaaat 28056459  T
Q  201 aaataaataaatgatatttgtacaactattttatgataacttttgaacatctct 254  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  28056458 aaataaataaatgatattcgtaaaactattttatgataacttttgaacatctct 28056405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 3154710 - 3154675
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttttg 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  3154710 aatgatatttgtacaactattttatgataacttttg 3154675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 7144580 - 7144620
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  7144580 aaatgatatttgtacaaccattttatgataacttttaaaca 7144620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 19844377 - 19844341
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19844377 aaatgatatttgtacaactattttttgataacttttg 19844341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 41179398 - 41179440
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||    
T  41179398 ataaatgttatttgtacaaccattttatgataacttttaaaca 41179440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 17489349 - 17489386
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  17489349 ataaatgatatttgtacaactattttttgataattttt 17489386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 38890418 - 38890451
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||| |||||||||||||||||||||||    
T  38890418 aatgatatttatacaactattttatgataacttt 38890451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 582935 - 582895
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  582935 aaatgatatttttacaactattttgtgataacttttaaaca 582895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 4098624 - 4098660
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  4098624 ataaatgatatttgtacaactattttgtgacaacttt 4098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 29803228 - 29803268
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  29803228 aaatgatatttgtacaactattttttgacaacttttaaaca 29803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 32379997 - 32379957
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  32379997 aaatggtatttgtacaactagtttatgacaacttttgaaca 32379957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 14531624 - 14531660
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  14531624 aaatgatatttgtacaactattttatgataacttttg 14531660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 12697781 - 12697741
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  12697781 aaatgatatttatacaactattttatgataatttttgaaca 12697741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 14228710 - 14228746
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14228710 aaatgatatttgtacaactattttgtgataacttttg 14228746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 29913567 - 29913607
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  29913567 aaatgatatttgtacaactattttatgataatttttaaaca 29913607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 34037552 - 34037520
Alignment:
Q  211 atgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||||||||||||||||||||||||    
T  34037552 atgatatttgtacaactattttatgataacttt 34037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 4312551 - 4312587
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||| |||||||||||||||||| |||||    
T  4312551 aaatgatatttgaacaactattttatgataatttttg 4312587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 12655925 - 12655961
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  12655925 aaatgatatttgtacaaccattttataataacttttg 12655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 33605146 - 33605110
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  33605146 aaatgatatttgaacaaccattttatgataacttttg 33605110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 40074855 - 40074895
Alignment:
Q  204 taaataaatgatatttgtacaactattttatgataactttt 244  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  40074855 taaagaaatgatatttgaacaactattttatgataattttt 40074895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 40380284 - 40380320
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  40380284 aaatgatatttgtacatctattttatgacaacttttg 40380320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 40614258 - 40614218
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| |||||||| |||||||||| |||||||||    
T  40614258 aaatgatatttatacaactactttatgataatttttgaaca 40614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 25994996 - 25994948
Alignment:
Q  197 aaataaataaataaatgatatttgtacaactattttatgataacttttg 245  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  25994996 aaataaataaataaatgatatttgtacaattattttgtgataatttttg 25994948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 34395989 - 34395947
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  34395989 ataaatgatatttgtacatctattttatgacaacttttgaaca 34395947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 26585241 - 26585205
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26585241 aaatgatatttgtacaactattttgtgataacttttg 26585205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 29706771 - 29706735
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29706771 aaatgatatttgtacaaccattttatgataacttttg 29706735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 41619060 - 41619096
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttttga 246  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41619060 aatgatatttgtacaactattttttgataacttttga 41619096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 18639774 - 18639736
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  18639774 ataaatgatatttgtacaacgattttttgataacttttg 18639736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 52261342 - 52261376
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||| ||||||||||||||||||||||    
T  52261342 aaatgatatttgaacaactattttatgataacttt 52261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 26839376 - 26839421
Alignment:
Q  200 taaataaataaatgatatttgtacaactattttatgataacttttg 245  Q
    |||| ||| ||||| |||||||||||| ||||||||||||||||||    
T  26839376 taaaaaaagaaatggtatttgtacaaccattttatgataacttttg 26839421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 52369181 - 52369144
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  52369181 ataaatgatatttgtacaactactttattataactttt 52369144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 7078568 - 7078528
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  7078568 aaatgatatttgtacatctattttgtgacaacttttgaaca 7078528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 8757594 - 8757550
Alignment:
Q  201 aaataaataaatgatatttgtacaactattttatgataacttttg 245  Q
    ||||||||||| ||||||| |||||| |||||||||||| |||||    
T  8757594 aaataaataaaagatatttatacaacaattttatgataatttttg 8757550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 11947798 - 11947834
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  11947798 aaatgatatttgtacaaccattttatgacaacttttg 11947834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 27352633 - 27352669
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27352633 aaatgatatttgtacaaccattttgtgataacttttg 27352669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 31184284 - 31184324
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  31184284 aaatgatatttgtacaaccattttatgacaactttttaaca 31184324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 32873344 - 32873380
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||| | ||||||||||||||||||    
T  32873344 aaatgatatttgtacatccattttatgataacttttg 32873380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 42843412 - 42843376
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  42843412 aaatgatatttgtacaacaattttttgataacttttg 42843376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 49699820 - 49699780
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| |||||||||||| |||| ||||    
T  49699820 aaatgatatttgtacaaccattttatgataattttttaaca 49699780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 43622015 - 43621976
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  43622015 aatgatatttgtacaactattttatgacaacttttgaaca 43621976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 22303206 - 22303246
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  22303206 aaatgatatttgtacaactattttttgacaacttttgaaca 22303246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 36175742 - 36175778
Alignment:
Q  205 aaataaatgatatttgtacaactattttatgataact 241  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36175742 aaataaatgatatttgtacaactattttatgacaact 36175778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 3091744 - 3091779
Alignment:
Q  209 aaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||||||| |||||||||||    
T  3091744 aaatgatatttgtacaactattttgtgataactttt 3091779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 44530758 - 44530715
Alignment:
Q  201 aaataaataaatgatatttgtacaactattttatgataactttt 244  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||    
T  44530758 aaataaagaaatgatatttgaacaattattttatgataactttt 44530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 14891146 - 14891112
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||||||||||||||| ||||||||||    
T  14891146 aaatgatatttgtacaactattttgtgataacttt 14891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 15505178 - 15505212
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||| ||||||||||||||||||||||    
T  15505178 aaatgatatttgaacaactattttatgataacttt 15505212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 4059421 - 4059372
Alignment:
Q  205 aaataaatgatatttgtacaactattttatgataacttttgaacatctct 254  Q
    ||||||| |||||||||| |||||||||||||||| |||| |||| ||||    
T  4059421 aaataaacgatatttgtataactattttatgataatttttaaacaactct 4059372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 20507655 - 20507618
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttga 246  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  20507655 aaatgatatttgaacaactattttataataacttttga 20507618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 26321775 - 26321730
Alignment:
Q  199 ataaataaataaatgatatttgtacaactattttatgataactttt 244  Q
    ||||| ||| |||||||||||||||||| ||||| |||||||||||    
T  26321775 ataaaaaaagaaatgatatttgtacaaccattttgtgataactttt 26321730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 26321943 - 26321898
Alignment:
Q  199 ataaataaataaatgatatttgtacaactattttatgataactttt 244  Q
    ||||| ||| |||||||||||||||||| ||||| |||||||||||    
T  26321943 ataaaaaaagaaatgatatttgtacaaccattttgtgataactttt 26321898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 3299173 - 3299133
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  3299173 aaatgatatttgtacaaccattttatgacaacttttaaaca 3299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 4319772 - 4319808
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||||| |||| |||||    
T  4319772 aaatgatatttgtacaactattttataataatttttg 4319808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 8805233 - 8805269
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  8805233 aaatgatatatgtacaactattttatgataatttttg 8805269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 9384369 - 9384401
Alignment:
Q  200 taaataaataaatgatatttgtacaactatttt 232  Q
    |||||||| ||||||||||||||||||||||||    
T  9384369 taaataaagaaatgatatttgtacaactatttt 9384401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 14255305 - 14255341
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  14255305 aaataatatttgtacaactattttatgacaacttttg 14255341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 18508081 - 18508117
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||| | ||||||||||||||||||    
T  18508081 aaatgatatttgtacatccattttatgataacttttg 18508117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29871420 - 29871380
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||||||||| || ||||||| ||||||||||||    
T  29871420 aaatgatatttgtacaattagtttatgacaacttttgaaca 29871380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 29893613 - 29893649
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  29893613 aaatgatatttgtacaactaatttgtgataacttttg 29893649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 30220878 - 30220842
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||| | ||||||||||||    
T  30220878 aaatgatatttgtacaactattctgtgataacttttg 30220842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 35334523 - 35334559
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35334523 aaatgatatttgtacaaccattttataataacttttg 35334559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 5068691 - 5068653
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaa 247  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5068691 aaatgatatttgtacaaccattttatgataacttttgaa 5068653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 10945023 - 10945060
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10945023 ataaatgatatttgaacaactattttatgataactttt 10945060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 26153649 - 26153686
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttga 246  Q
    |||||||||||||||||||||||||||| |||||||||    
T  26153649 aaatgatatttgtacaactattttatgacaacttttga 26153686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 34690991 - 34690954
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttttgaa 247  Q
    |||||||||||||||||||||||||||||| |||||||    
T  34690991 aatgatatttgtacaactattttatgataatttttgaa 34690954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 40760836 - 40760796
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  40760836 aaatgatatttatacaactattttgtgataacttttgaaca 40760796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 677837 - 677803
Alignment:
Q  215 tatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||||||||||    
T  677837 tatttgtacaactattttttgataacttttgaaca 677803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 2849589 - 2849551
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaa 247  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  2849589 aaatgatatttgtacaattattttttgataacttttgaa 2849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 10015023 - 10014993
Alignment:
Q  209 aaatgatatttgtacaactattttatgataa 239  Q
    |||||||||||||||||||||||||||||||    
T  10015023 aaatgatatttgtacaactattttatgataa 10014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 11604752 - 11604710
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||  |||||||||||| |||||||||    
T  11604752 ataaatgatatttgtacaaaaattttatgataatttttgaaca 11604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 37385303 - 37385265
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  37385303 ataaatgatatttgtacaactattttttgacaacttttg 37385265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 30818065 - 30818028
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttga 246  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  30818065 aaatgatatttgtacaaccattttatgacaacttttga 30818028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 12141902 - 12141942
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  12141902 aaatcatatttgtacaaccattttgtgataacttttgaaca 12141942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 22692087 - 22692127
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  22692087 aaatgatatttgtacaaccattttatgacaacttttaaaca 22692127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 29763833 - 29763869
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29763833 aaatgatatttgtacaaccattttgtgataacttttg 29763869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 36580743 - 36580775
Alignment:
Q  209 aaatgatatttgtacaactattttatgataact 241  Q
    ||||||||||||||||||||||| |||||||||    
T  36580743 aaatgatatttgtacaactatttaatgataact 36580775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 37173050 - 37173006
Alignment:
Q  201 aaataaataaatgatatttgtacaactattttatgataacttttg 245  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||||    
T  37173050 aaataaagaaatgatatttgtacaaccaatttgtgataacttttg 37173006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 38259066 - 38259102
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  38259066 aaatgatatttgtacaaccattttttgataacttttg 38259102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 47530359 - 47530319
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| |||||| ||||||||| ||||||||||||    
T  47530359 aaatgatatttatacaaccattttatgacaacttttgaaca 47530319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 16139365 - 16139323
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  16139365 ataaataatatttgtacaaccattttatgataacttttgaaca 16139323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 21239146 - 21239108
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaa 247  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21239146 aaatgatatttgtacaactattttatgataatttttgaa 21239108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 1295335 - 1295371
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1295335 aaatgatatttgtacaactattttgtgataacttttg 1295371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 36799401 - 36799441
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  36799401 aaatgatatttgtacaactattttttgataacttttaaaca 36799441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 35987249 - 35987291
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||    
T  35987249 ataagtgatatttgtacaactattttgtgataacttttaaaca 35987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 30633706 - 30633739
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttt 243  Q
    ||||||||||||||| ||||||||||||||||||    
T  30633706 aatgatatttgtacatctattttatgataacttt 30633739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 49031439 - 49031472
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttt 243  Q
    ||||||||||||||||||||||| ||||||||||    
T  49031439 aatgatatttgtacaactattttgtgataacttt 49031472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 7867779 - 7867739
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  7867779 aaatgatatttgtacaactattttgtgacaacttttaaaca 7867739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 20549453 - 20549417
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||| |||||||||||||| |||||    
T  20549453 aaatgatatttgtacatctattttatgataatttttg 20549417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 22836263 - 22836223
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| |||||||||||| |||| ||||    
T  22836263 aaatgatatttgtacaaccattttatgataatttttcaaca 22836223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 26645029 - 26645065
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  26645029 aaatgatatttgaacacctattttatgataacttttg 26645065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 37134674 - 37134634
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  37134674 aaatgatatttgtacaactattttatgacaattttttaaca 37134634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 43499629 - 43499593
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| | ||||||||||||||||    
T  43499629 aaatgatatttgtacaaccactttatgataacttttg 43499593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 47392501 - 47392461
Alignment:
Q  204 taaataaatgatatttgtacaactattttatgataactttt 244  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  47392501 taaagaaatgatatttgaacaactattttatgataattttt 47392461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 50559280 - 50559244
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  50559280 aaatgatatttgtacaactattttttgacaacttttg 50559244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 50652391 - 50652427
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  50652391 aaatgatatttgtacaaccattttatgacaacttttg 50652427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 51137104 - 51137068
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| | ||||||||||    
T  51137104 aaatgatatttgtacaactattttttaataacttttg 51137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 3401085 - 3401126
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaac 248  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  3401085 ataaatgatatttgtacaactattttgtgataatttttgaac 3401126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 29172991 - 29173028
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29172991 ataaatgatatttgtacaaccattttatgataactttt 29173028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 736888 - 736853
Alignment:
Q  209 aaatgatatttgtacaactattttatgataactttt 244  Q
    ||||||||||||||||||||||||||||||| ||||    
T  736888 aaatgatatttgtacaactattttatgataattttt 736853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 29467364 - 29467402
Alignment:
Q  205 aaataaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  29467364 aaataaataatatttgtacaactattttatgacaacttt 29467402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 27334861 - 27334897
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  27334861 aaatgatatttgtacaactattttgtgacaacttttg 27334897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 27395601 - 27395637
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  27395601 aaatgatatttgtacaactattttgtgacaacttttg 27395637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 12074475 - 12074520
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaacatctct 254  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  12074475 aaatgatatttatacaactattttatgataatttttgaacaactct 12074520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 24088632 - 24088587
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaacatctct 254  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  24088632 aaatgatatttgtacaaccattttatgacaacttttgaacaactct 24088587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 34114187 - 34114150
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34114187 ataaatgatatttgtacaactattttattataactttt 34114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 21152655 - 21152691
Alignment:
Q  210 aatgatatttgtacaactattttatgataacttttga 246  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21152655 aatgatatttgtacaacaattttatgataacttttga 21152691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 36444463 - 36444423
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  36444463 aaatgatatttgtacaaccattttatgataactttttaaca 36444423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 44626608 - 44626644
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44626608 aaatgatatttgaacaactattttatgataacttttg 44626644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 52430880 - 52430915
Alignment:
Q  209 aaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||||||||||||| |||||||    
T  52430880 aaatgatatttgtacaactattttatgacaactttt 52430915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 52632159 - 52632194
Alignment:
Q  209 aaatgatatttgtacaactattttatgataactttt 244  Q
    |||| |||||||||||||||||||||||||||||||    
T  52632159 aaataatatttgtacaactattttatgataactttt 52632194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 32464672 - 32464642
Alignment:
Q  209 aaatgatatttgtacaactattttatgataa 239  Q
    |||||||||||||||||||||||||||||||    
T  32464672 aaatgatatttgtacaactattttatgataa 32464642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 45922007 - 45922049
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||| |||||||||||| ||||| |||||||||||||||||    
T  45922007 ataaataatatttgtacaattatttaatgataacttttgaaca 45922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 32303358 - 32303317
Alignment:
Q  204 taaataaatgatatttgtacaactattttatgataacttttg 245  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  32303358 taaaaaaatgatatttgtacaactattttgtgataatttttg 32303317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 39449176 - 39449213
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttga 246  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  39449176 aaatgatatttatacaactattttgtgataacttttga 39449213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 3475872 - 3475908
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  3475872 aaatgatatttgtacaaccattttatgacaacttttg 3475908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 8455864 - 8455904
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  8455864 aaatgttatttgtacaactattttgtgacaacttttgaaca 8455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 11012144 - 11012184
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  11012144 aaatgatatttgtacaaccattttatgacaactttttaaca 11012184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 19879776 - 19879816
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  19879776 aaatgatatttgtacaatcattttatgataatttttgaaca 19879816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 31995984 - 31995948
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| |||||| |||||    
T  31995984 aaatgatatttgtacaactattttttgataaattttg 31995948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 32901332 - 32901368
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttg 245  Q
    |||||||||||||||||||||||| |||||| |||||    
T  32901332 aaatgatatttgtacaactattttttgataatttttg 32901368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 44272878 - 44272838
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  44272878 aaatgatatttgtacaactattttttgacaacttttaaaca 44272838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 47014942 - 47014982
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  47014942 aaatgatatttgtacaactattttgtgacaacttttaaaca 47014982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 4318 - 4353
Alignment:
Q  209 aaatgatatttgtacaactattttatgataactttt 244  Q
    |||||||||||||||||| |||||||||||||||||    
T  4318 aaatgatatttgtacaaccattttatgataactttt 4353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 1081 - 1121
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  1081 aaatgatatttgtacaactattttgtgacaacttttaaaca 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 8043 - 8003
Alignment:
Q  209 aaatgatatttgtacaactattttatgataacttttgaaca 249  Q
    ||||||||||| |||||| ||||||||| ||||||||||||    
T  8043 aaatgatatttatacaaccattttatgacaacttttgaaca 8003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 34409 - 34445
Alignment:
Q  207 ataaatgatatttgtacaactattttatgataacttt 243  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  34409 ataaatgatatttgtacaactattttttgacaacttt 34445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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