View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_low_19 (Length: 245)
Name: NF3608_low_19
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18748139 - 18747899
Alignment:
| Q |
1 |
cttttccaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagcccccttttagtgtgt--gtgtattttcaacaattgaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18748139 |
cttttccaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagcccccttttagtgtgtgtgtgtattttcaacaattgaa |
18748040 |
T |
|
| Q |
99 |
taagtatcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttact |
198 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18748039 |
taagtatcatcatctatggcacatctctggaag-aaaaaaaatgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttact |
18747941 |
T |
|
| Q |
199 |
agtaattattttgaggaccaaatatttacctttacatctgtg |
240 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18747940 |
agtaattattttaaggaccaaatatttacctttacatctgtg |
18747899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 52367530 - 52367687
Alignment:
| Q |
83 |
attttcaacaattgaataagtatcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttg |
182 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
52367530 |
atttccaacaattgaataagtatcatcatctatggcacatctctggaa----aacaaatgcaaaacaatcatcagtaatcttaatttcattagtacttca |
52367625 |
T |
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| Q |
183 |
cataggt-acattta---ctagtaattattttgaggaccaaatatttacctttacatctgtg |
240 |
Q |
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||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
52367626 |
catgggtaacatttactgctagtaattattttgaggatcaaatatttacctttacatttgtg |
52367687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23247665 - 23247903
Alignment:
| Q |
1 |
cttttccaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagcccccttttagtgtgtgtgtattttcaacaattgaata |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23247665 |
ctttttcaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagcccccttttagtgtgtgtgtatttccaacaattgaata |
23247764 |
T |
|
| Q |
101 |
agtatcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactag |
200 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23247765 |
agtatcatcatctatggcacatctctggaagaaaaaaaatt-caaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactag |
23247863 |
T |
|
| Q |
201 |
taattattttgaggaccaaatatttacctttacatctgtg |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
23247864 |
taattattttgaggaccaaatatttacctttacatttgtg |
23247903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24252503 - 24252739
Alignment:
| Q |
1 |
cttttccaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagcccccttttagtgtgtgtgtattttcaacaattgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
24252503 |
cttttccaaagtaaagcaagctcccttttgcaacaagtaatattctaaattagtaaagcaagccccctttta--gtgtgtgtatttccaacaattgaata |
24252600 |
T |
|
| Q |
101 |
agtatcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactag |
200 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24252601 |
agtatcatcatctatgggacatctctagaagaaaaaaaatt-caaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactag |
24252699 |
T |
|
| Q |
201 |
taattattttgaggaccaaatatttacctttacatctgtg |
240 |
Q |
| |
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||| | ||||||||||||||||||||||||||||| |||| |
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|
| T |
24252700 |
taagtgttttgaggaccaaatatttacctttacatttgtg |
24252739 |
T |
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