View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3608_low_7 (Length: 343)
Name: NF3608_low_7
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 71 - 335
Target Start/End: Original strand, 38139555 - 38139820
Alignment:
| Q |
71 |
atatgtactcatgagtcatgacatt-ggtgaatcttgttggtggtgtggtaatagtaaagacataaatccggtgcattttaattttagggacggcatttc |
169 |
Q |
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| T |
38139555 |
atatgtactcatgagtcatgacatttggtgaatcttgttggtggtgtggtaatagtaaagacataaatccggtgcattttaattttagggacggcatttc |
38139654 |
T |
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| Q |
170 |
agaatcaggaccaacgttttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtccccctaaacaggaccaaccnnnnnnnncccctaa |
269 |
Q |
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| T |
38139655 |
agaaacaggaccaacgttttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtccccctaaacaggaccaacctttttttccccctaa |
38139754 |
T |
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| Q |
270 |
atgtaatactgttttgaacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
335 |
Q |
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| T |
38139755 |
atgtaatactgttttgaacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
38139820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 38117273 - 38117515
Alignment:
| Q |
3 |
ttaatatccgattcatttctgttgggttgtgttttactgtttatcattacattaaactttacttgaatatatgtactcatgagtcatgacat-tggtgaa |
101 |
Q |
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| T |
38117273 |
ttaatatccaattcatttttattgggctgtgcttgactgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaa |
38117372 |
T |
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| Q |
102 |
tcttgttggtggtgtggtaatagtaaagaca--taaatccggtgcattttaattttagggacggcatttcagaatcaggaccaa-----cgt-tttcttg |
193 |
Q |
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| T |
38117373 |
aattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttg |
38117472 |
T |
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| Q |
194 |
aattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
236 |
Q |
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| T |
38117473 |
aattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
38117515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 38161318 - 38161374
Alignment:
| Q |
278 |
ctgttttgaacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgat |
334 |
Q |
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| T |
38161318 |
ctgttttgaacttgcctttgtttgaatttaacttgccttgaccaatttgttgttgat |
38161374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 38161099 - 38161147
Alignment:
| Q |
3 |
ttaatatccgattcatttctgttgggttgtgttttactgtttatcatta |
51 |
Q |
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| T |
38161099 |
ttaatatccaattcatttctgttgggctgtgttttacggtttatcatta |
38161147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 38117544 - 38117597
Alignment:
| Q |
281 |
ttttgaacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
335 |
Q |
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| T |
38117544 |
tttttaacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgatg |
38117597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 49005075 - 49005263
Alignment:
| Q |
3 |
ttaatatccgattcatttctgttgggttgtgttttactgtttatcattacattaaactttacttgaatatatgtactcatgagtcatgacatt-ggtgaa |
101 |
Q |
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| T |
49005075 |
ttaatatccaattcatttctattgggctgtgtttgactgtttatcattagattaaactttacttgaaaatatgtaatcatcattcatgacatttggttaa |
49005174 |
T |
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| Q |
102 |
tcttgttggtggtgtggtaatagtaaagaca--taaatccggtgcattttaattttagggacggcatttcagaatcaggaccaacgttt |
188 |
Q |
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| T |
49005175 |
aattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatttcagaaacaggaccaatgttt |
49005263 |
T |
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