View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3608_low_9 (Length: 313)
Name: NF3608_low_9
Description: NF3608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3608_low_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 2597092 - 2597373
Alignment:
| Q |
1 |
gatccttaaaacccttcctttgctcttctatcaatctaaattcaaaactaccattgggttaaacgtctgtcaaaaatacaaaaatgaaaactcatgattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
2597092 |
gatccttaaaacccttcctttgctcttctatcaatctaaattcgaaactaccattgggttaaacgtctatcaaaaataaaaaaatgaaaactcattattt |
2597191 |
T |
|
| Q |
101 |
tctccactcttatttttgcaaacaatggtctaatgttattcgatttcgtgaagtccctagagaaaccttgaacatgtgaaaaaatctatcattataattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
2597192 |
tctccactcttatttttgcaaacaatggtctaatgttattcgatttcgttaaatccctagagaaaccttgaatatttgaaaaaatctatcattataattt |
2597291 |
T |
|
| Q |
201 |
aaaggttattagaggggtagtaagtgtctannnnnnnaagatacaaggggaggttattatttaattaaaggttattagaggg |
282 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2597292 |
aaaggttattagagcggtagtaagtgtctatttttttaagatacaagggaaggttattatttaattaaaggttattagaggg |
2597373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 26820269 - 26820069
Alignment:
| Q |
2 |
atccttaaaacccttc-ctttgctcttctatcaatctaaattcaaaactaccattgggttaaacgtctgtcaaaaa-tacaaaaa-tgaaaactcatgat |
98 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||| ||||| |||||||| |||||||| | ||||| |||||||| |||| |||||| || |
|
|
| T |
26820269 |
atccttaaaacccttttcgttgctcttctatcattctaaattctaaactttcattgggt-aaacgtctataaaaaaatacaaaaaatgaatactcattat |
26820171 |
T |
|
| Q |
99 |
tttctccactcttatttttgcaaacaatggtctaatgttattcgatttcgtgaagtccctagagaaaccttgaacatgtgaaaaaatctatcattataat |
198 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||| || | ||||||| |||| ||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
26820170 |
tttctccacatttattttttcaaacaatggtctaatactatccgttctcgtgaaatccccggagaaaccttgaatatgtgaaaaaat-tatcattataat |
26820072 |
T |
|
| Q |
199 |
tta |
201 |
Q |
| |
|
||| |
|
|
| T |
26820071 |
tta |
26820069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 54505226 - 54505119
Alignment:
| Q |
92 |
tcatgattttctccactcttatttttgcaaacaatggtctaatgttattcgatttcgtgaagtccctagagaaaccttgaacatgtgaaaaaatctatca |
191 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| ||||| || ||||||| ||||| ||||||||||||| |||| ||||||| ||||| |
|
|
| T |
54505226 |
tcattattttctccacttttatttttgcaaacaatggtctaatgctattcaatctcgtgaaatccctggagaaaccttgaatatgtaaaaaaat-tatca |
54505128 |
T |
|
| Q |
192 |
ttataattt |
200 |
Q |
| |
|
|| |||||| |
|
|
| T |
54505127 |
ttctaattt |
54505119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 51738335 - 51738367
Alignment:
| Q |
281 |
ggttcacacgcttggttgaattggaccttgctc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
51738335 |
ggttcacacgcttggttgaattggaccttgctc |
51738367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University