View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3609_high_1 (Length: 891)
Name: NF3609_high_1
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3609_high_1 |
 | |
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| [»] scaffold0176 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 24992812 - 24993267
Alignment:
| Q |
11 |
caattttattgtgttcgttgattgtggtgtcttctctccctatttgtggtcacagataatcagaagctctatattcaattaatcagaagctcaagcggag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24992812 |
caattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaattaatcagaagctcaagcggag |
24992911 |
T |
|
| Q |
111 |
atcatagcccgaaaactttgaatgacttagagaaaagacagttgaattgaagaggtcacctctgatctgattttcagtttctctatattcaattaatttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24992912 |
atcatagcccgaaaactttgaatgacttagagaaaagacagttga-----agaggtcacctctgatctgattttcagtttctctatattcaattaatttc |
24993006 |
T |
|
| Q |
211 |
gaacttttaaaattatcatgtcattagtgttcagattattattcaaaccttatttcttattaatttttggcttgtgatatctattgtagggtgtggctgg |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24993007 |
gaacttttaaaattatcatgccattagtgttcagattattatgcaaaccttatttcttattaattttttgcttgtgatatctattgtagggtgtggctgg |
24993106 |
T |
|
| Q |
311 |
tgatagaatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgtgtgtatatttatctatatagcttttgaatacaaaactaaagc |
410 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24993107 |
tgatagtatcaacggtgtaaatcagcactcgtaaaggtttgtgtgtagatgaa----tgtgtatatttagatatatagcttttgaatacaaaactaaagc |
24993202 |
T |
|
| Q |
411 |
tgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttattatt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24993203 |
tgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttaatatt |
24993267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 467 - 882
Target Start/End: Original strand, 34168558 - 34168973
Alignment:
| Q |
467 |
tttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgcttcatcaaatatcaatccatggacaattattggagataattcatcatcg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34168558 |
tttattattctaaattaatgtttcaggttttgaagcagggggttccaatgtttcatcaaatatcaatccatggataattattggagataattcatcatcg |
34168657 |
T |
|
| Q |
567 |
attatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaaggacaatcatgtccacttggtgttg |
666 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34168658 |
attatcgtatcaactgatcgttcatcttgttttgagtgtaataaggttgctttacgttcagatgttctttgtcaaggacaatcatgtccacttggtggtg |
34168757 |
T |
|
| Q |
667 |
ttggtatctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatg |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34168758 |
ttggtatctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatg |
34168857 |
T |
|
| Q |
767 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34168858 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
34168957 |
T |
|
| Q |
867 |
atcggatctgatgatg |
882 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34168958 |
atcggatctgatgatg |
34168973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 467 - 882
Target Start/End: Original strand, 34208768 - 34209183
Alignment:
| Q |
467 |
tttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgcttcatcaaatatcaatccatggacaattattggagataattcatcatcg |
566 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
34208768 |
tttattattctaaattaatgtttgaggttttgaagcaggaggttccaatgtttcatcaaatattaatctatggactattattgaagataattcatcatcg |
34208867 |
T |
|
| Q |
567 |
attatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaaggacaatcatgtccacttggtgttg |
666 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34208868 |
attatcgtatcaactgatcgttcctcttgttttgagcgtaataaggttgctttacgtttagatgttctttgtcaaggacaatcatgtccacttggtggtg |
34208967 |
T |
|
| Q |
667 |
ttggtatctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatg |
766 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34208968 |
ttggtatctccaatcctgaattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatg |
34209067 |
T |
|
| Q |
767 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34209068 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
34209167 |
T |
|
| Q |
867 |
atcggatctgatgatg |
882 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34209168 |
atcggatctgatgatg |
34209183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 467 - 692
Target Start/End: Complemental strand, 34155347 - 34155122
Alignment:
| Q |
467 |
tttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgcttcatcaaatatcaatccatggacaattattggagataattcatcatcg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34155347 |
tttattattctaaattaatgtttcaggttttgaagcagggggttccaatgtttcatcaaatatcaatccatggataattattggagataattcatcatcg |
34155248 |
T |
|
| Q |
567 |
attatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaaggacaatcatgtccacttggtgttg |
666 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34155247 |
attatcgtatcaactgatcgttcatcttgttttgagtgtaataaggttgctttacgttcagatgttctttgtcaaggacaatcatgtccacttggtggtg |
34155148 |
T |
|
| Q |
667 |
ttggtatctccaatcctggattttgg |
692 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
34155147 |
ttggtatctccaatcctggattttgg |
34155122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 693 - 882
Target Start/End: Complemental strand, 34153783 - 34153594
Alignment:
| Q |
693 |
ggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatgtttctaatatttttacaaacagaaca |
792 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34153783 |
ggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatgtttctaatatttttacaaacagaaca |
34153684 |
T |
|
| Q |
793 |
ttgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcggatctgatgatg |
882 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34153683 |
ttgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcggatctgatgatg |
34153594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 467 - 882
Target Start/End: Original strand, 28880 - 29295
Alignment:
| Q |
467 |
tttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgcttcatcaaatatcaatccatggacaattattggagataattcatcatcg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
28880 |
tttattattctaaattaatgtttcaggttttgaagnagggggttccaatgtttcatcaaatatcaatccatggataattattgnagataattcatcatcg |
28979 |
T |
|
| Q |
567 |
attatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaaggacaatcatgtccacttggtgttg |
666 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28980 |
attatcgtatcaactgatcgttcatcttgttttgagngtaataaggttgctttacgttnagatgttctttgtcaaggacaatcatgtccacttggtggtg |
29079 |
T |
|
| Q |
667 |
ttggtatctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatg |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29080 |
ttggtatctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatg |
29179 |
T |
|
| Q |
767 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29180 |
tttctaatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
29279 |
T |
|
| Q |
867 |
atcggatctgatgatg |
882 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29280 |
atcggatctgatgatg |
29295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 698
Target Start/End: Complemental strand, 38726602 - 38726433
Alignment:
| Q |
532 |
atccatggacaattattggagat---aattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttaga |
628 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || |||| |||||||| ||| |||||| |||||||||||||||| ||||| | ||| | || |
|
|
| T |
38726602 |
atccatggacaattattggagatcagaataaatcttccattactgtatcaactgatatgtcctctagttttgagcgtaataaagttgcgttacgcatgga |
38726503 |
T |
|
| Q |
629 |
tgttctttgtcaaggacaatcatgtccacttggtgttgttggtatctccaatcctggattttggggcatg |
698 |
Q |
| |
|
| |||||||||||||| |||| ||||| | | | | |||||||||||| |||||||| | |||||||||| |
|
|
| T |
38726502 |
tattctttgtcaaggaaaatcttgtccgcgtagcggtgttggtatctctaatcctggttattggggcatg |
38726433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 866
Target Start/End: Complemental strand, 38726433 - 38726355
Alignment:
| Q |
788 |
gaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
866 |
Q |
| |
|
||||||||| ||||| |||| |||||| || ||||| |||||| |||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
38726433 |
gaacattgaacaaggtaaaatgtataaggtcgtgttgcatgttaaatcacttggtccaattgatttaaaagtttcattt |
38726355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 1618104 - 1618173
Alignment:
| Q |
300 |
ggtgtggctggtgatag-aatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgt |
368 |
Q |
| |
|
||||||||| |||||| ||| || |||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1618104 |
ggtgtggcttgtgataataattaagggtgtaaaccagcactcttaaaggtttgtgcttagatgaatgtgt |
1618173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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