View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3609_high_2 (Length: 614)
Name: NF3609_high_2
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3609_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 52544096 - 52544672
Alignment:
| Q |
1 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtcccgtttataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
100 |
Q |
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| T |
52544096 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtccc----ataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
52544191 |
T |
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| Q |
101 |
attcagttggctctgattgtttatggtggtcttgacgcaattgattgcttgtagaaatacttcatcatcagttttttattttaatgctagccttttatgc |
200 |
Q |
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| T |
52544192 |
attcagttggctctgattgtttatggtggtcttgactcaattgattgcttgtagaaatacttcatcatcagtttttgattttaatgctagccttttatgc |
52544291 |
T |
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| Q |
201 |
tgaactaagcctatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaa |
300 |
Q |
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| T |
52544292 |
tgaactaagcctatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaa |
52544391 |
T |
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| Q |
301 |
ttgtgtgcttgtgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctca |
400 |
Q |
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| T |
52544392 |
ttgtgtgcttgtgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctca |
52544491 |
T |
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| Q |
401 |
tactagttatgctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaagcacaaatgggtaactcaaataatctc |
500 |
Q |
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| T |
52544492 |
tactagttatgctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaagcacaaatgggtaactcaaataatctc |
52544591 |
T |
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| Q |
501 |
ttttttaattttatcaaccaattgtatgtgtgtgtgtttttattcttgattatccttccttgttaagaccatttaacttaa |
581 |
Q |
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| T |
52544592 |
ttttttaattttatcaaccaattgtatgtgtgtgtatttttattcttgattatccttccttgttaagaccatttaacttaa |
52544672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 596
Target Start/End: Original strand, 52544688 - 52544719
Alignment:
| Q |
565 |
aagaccatttaacttaaatgaatgtaagtttc |
596 |
Q |
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| T |
52544688 |
aagaccatttaacttaaatgaatgtaagtttc |
52544719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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