View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3609_high_4 (Length: 375)

Name: NF3609_high_4
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3609_high_4
NF3609_high_4
[»] chr8 (3 HSPs)
chr8 (13-356)||(42326889-42327233)
chr8 (64-146)||(2864008-2864090)
chr8 (51-135)||(37628630-37628714)
[»] chr4 (1 HSPs)
chr4 (38-155)||(54629463-54629580)
[»] chr6 (1 HSPs)
chr6 (63-155)||(9880714-9880806)
[»] chr7 (1 HSPs)
chr7 (38-145)||(44538867-44538974)
[»] chr3 (2 HSPs)
chr3 (39-146)||(34701914-34702021)
chr3 (38-122)||(51292429-51292513)
[»] chr2 (1 HSPs)
chr2 (70-117)||(43551413-43551460)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 42326889 - 42327233
Alignment:
Q  13 aatatatctaacctttttatcaagagaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42326889 aatatatctaacctttttatcaagagaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaac 42326988  T
Q  113 ctcccctcaaactaactctgttaaccatctgttagttcagactctagatagccttagtgttatgaactccctatacaattgagtacatcaacacctctgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42326989 ctcccctcaaactaactctgttaaccatctgttagttcagactctagatagccttagtgttatgaactccctatacaattgagtacatcaacacctctgc 42327088  T
Q  213 aactaattcaacccagcagtattaatccaaatctttagacat-ggccacaggcaatgatgtgatgacactgtattcctcttcaacttgttttcatttata 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327089 aactaattcaacccagcagtattaatccaaatctttagacataggccacaggcaatgatgtgatgacactgtattcctcttcaacttgttttcatttata 42327188  T
Q  312 ccgattagtcataaaactaaaaaacacatatattcccatattttc 356  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  42327189 ctgattagtcataaaactaaaaaacacatatattcccatattttc 42327233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 2864008 - 2864090
Alignment:
Q  64 ttttgttaaaagacacatacctcccctctagtttc-aaaaatacagtaacctcccctcaaactaactctgttaaccatctgtta 146  Q
    |||||||||| | |||||| ||||||||||||||| ||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  2864008 ttttgttaaatgtcacatatctcccctctagtttcaaaaaataca-taacctcccctcaacttaaccctgttaaccatctgtta 2864090  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 37628630 - 37628714
Alignment:
Q  51 acctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaaactaactctgtta 135  Q
    |||| ||| ||||||| |||||| | |||| |||||||||||| ||||||| ||||| |||| |||||||  | |||||||||||    
T  37628630 accttccctaaaatttagttaaatgtcacacacctcccctctaatttcaaatatacaataacatcccctctgattaactctgtta 37628714  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 54629580 - 54629463
Alignment:
Q  38 gaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaaactaactctgttaac 137  Q
    |||||||||| ||||||||||  |  ||  ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||  ||||||||||||     
T  54629580 gaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctcaatataactctgttaat 54629481  T
Q  138 catctgttagttcagact 155  Q
    |||| |||| ||||||||    
T  54629480 catcagttaattcagact 54629463  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 9880806 - 9880714
Alignment:
Q  63 attttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaaactaactctgttaaccatctgttagttcagact 155  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||  |||||||||||| ||| ||||| ||||||||    
T  9880806 atttggttaaaagacacacacctcccctctagtttaaaaaatacaattacctcccctcaatttaactctgttaagcatatgttaattcagact 9880714  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 44538867 - 44538974
Alignment:
Q  38 gaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaaactaactctgttaac 137  Q
    ||||||||||  ||||||||  ||  ||| |||||| ||||||||||||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||    
T  44538867 gaaaattacaatgacctcccttaaggtttggttaaatgacacatacctcccctccagtttcaataatacaacaacctcccctcaatctaactctgttaac 44538966  T
Q  138 catctgtt 145  Q
     |||||||    
T  44538967 tatctgtt 44538974  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 34702021 - 34701914
Alignment:
Q  39 aaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttca-aaaatacagtaacctcccctcaaactaactctgttaac 137  Q
    |||||||||  ||||||||| ||  |||||||||| | ||||||||||  ||||||||||| |||||||| ||||||||||||||  |||| ||||||||    
T  34702021 aaaattacattgacctcccctaaggttttgttaaatgtcacatacctcttctctagtttcaaaaaataca-taacctcccctcaacttaaccctgttaac 34701923  T
Q  138 catctgtta 146  Q
    ||| |||||    
T  34701922 catttgtta 34701914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 51292513 - 51292429
Alignment:
Q  38 gaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaa 122  Q
    ||||||||||   |||||||| ||  ||| |||||| | |||| |||||||||||||||||||||||||| ||||||||| ||||    
T  51292513 gaaaattacaaccacctcccctaaggtttagttaaatgtcacacacctcccctctagtttcaaaaatacaataacctcccttcaa 51292429  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 43551413 - 43551460
Alignment:
Q  70 taaaagacacatacctcccctctagtttcaaaaatacagtaacctccc 117  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||||    
T  43551413 taaatgacacatacctcccctctagtttcaataatacaataacctccc 43551460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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