View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3609_high_7 (Length: 249)
Name: NF3609_high_7
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3609_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7765186 - 7764948
Alignment:
| Q |
1 |
cgttattcttcactctctgctttgagtaaaccctaatttt--caaacggttaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaaa |
98 |
Q |
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| T |
7765186 |
cgttattcttcactctctgctttgagtaaaccctaattttttcaaacggttaagacaaaatgatagcgaaagacacg-----cacagaatggtaaagaaa |
7765092 |
T |
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| Q |
99 |
atatctacacgcagtggtagagagagtagtgggcttgggctcttatcgctacaaaggtttaacaaaacatttagcaaattgctatttcaacgcctttaat |
198 |
Q |
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| T |
7765091 |
atatctacacgcagtggtagagagagtggtgggcttgggctcttatcgctacataggtttaacaaaacatttagcaaattgctatttcaacgcctttaat |
7764992 |
T |
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| Q |
199 |
tgcttacatgcaacagaaacaacattttatttgtgttcatttca |
242 |
Q |
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| T |
7764991 |
tgcttacatgcaacagaaacaacattttatttgtgttcatttca |
7764948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 7785995 - 7785807
Alignment:
| Q |
18 |
tgctttgagtaaaccctaatttt-caaacggttaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaaaatatctacacgcagtggt |
116 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
7785995 |
tgctttgagtaaaccctaatttttcaaacggctaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaaaatatctacacgctatagt |
7785896 |
T |
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| Q |
117 |
agagagagtagtgggcttgggctcttatcgctacaaaggtttaacaaaacatttagcaaattgctatttcaacgcctttaattgcttac |
205 |
Q |
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| T |
7785895 |
agagagagtagtgggcttgggctcatatcgttagaaaggtttaacaaaacatttagcaaattgctatttaaacacgtttaattgcttac |
7785807 |
T |
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