View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3609_low_3 (Length: 587)

Name: NF3609_low_3
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3609_low_3
NF3609_low_3
[»] chr5 (36 HSPs)
chr5 (11-368)||(37428339-37428695)
chr5 (11-235)||(37382975-37383199)
chr5 (11-235)||(37434997-37435221)
chr5 (12-216)||(37593492-37593696)
chr5 (12-216)||(37695883-37696087)
chr5 (11-216)||(37532387-37532592)
chr5 (12-221)||(37823192-37823401)
chr5 (12-221)||(37401661-37401870)
chr5 (12-221)||(37639034-37639243)
chr5 (31-235)||(37393526-37393730)
chr5 (66-221)||(37710846-37711001)
chr5 (66-235)||(37702025-37702194)
chr5 (251-368)||(37639719-37639836)
chr5 (251-368)||(37382531-37382648)
chr5 (251-368)||(37393082-37393199)
chr5 (251-368)||(37711477-37711594)
chr5 (251-368)||(37823742-37823859)
chr5 (251-368)||(37401068-37401185)
chr5 (251-368)||(37594177-37594294)
chr5 (251-368)||(37696568-37696685)
chr5 (251-368)||(37702521-37702638)
chr5 (251-329)||(37532938-37533016)
chr5 (251-324)||(37401247-37401320)
chr5 (251-324)||(37639584-37639657)
chr5 (251-324)||(37711342-37711415)
chr5 (252-340)||(37435549-37435637)
chr5 (293-368)||(37413452-37413527)
chr5 (379-480)||(6273241-6273342)
chr5 (150-235)||(37413814-37413899)
chr5 (251-324)||(37594042-37594115)
chr5 (251-324)||(37696433-37696506)
chr5 (381-477)||(14351830-14351926)
chr5 (381-433)||(17644142-17644194)
chr5 (379-453)||(32383804-32383878)
chr5 (381-433)||(18942364-18942416)
chr5 (381-433)||(35456622-35456674)
[»] chr4 (11 HSPs)
chr4 (11-235)||(16843645-16843869)
chr4 (11-235)||(16846313-16846536)
chr4 (11-235)||(24218380-24218604)
chr4 (380-495)||(43245591-43245705)
chr4 (397-495)||(13428667-13428764)
chr4 (251-368)||(16843066-16843183)
chr4 (251-368)||(24217936-24218053)
chr4 (251-356)||(16845877-16845982)
chr4 (251-324)||(16843245-16843318)
chr4 (374-438)||(10006678-10006742)
chr4 (381-433)||(4414530-4414582)
[»] chr3 (4 HSPs)
chr3 (20-195)||(14552668-14552843)
chr3 (381-420)||(51537138-51537177)
chr3 (381-433)||(29727852-29727904)
chr3 (395-481)||(35054597-35054683)
[»] chr8 (4 HSPs)
chr8 (374-495)||(26403518-26403632)
chr8 (381-420)||(28761630-28761669)
chr8 (380-481)||(38712111-38712212)
chr8 (397-481)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (380-481)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (380-481)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (379-476)||(3794258-3794355)
chr1 (379-481)||(3014060-3014162)
chr1 (381-443)||(32364236-32364298)
chr1 (379-481)||(24638812-24638914)
chr1 (379-481)||(44410825-44410927)
chr1 (374-481)||(40960100-40960207)
[»] chr7 (5 HSPs)
chr7 (384-495)||(35331681-35331793)
chr7 (379-454)||(31813601-31813676)
chr7 (379-453)||(5419006-5419080)
chr7 (379-420)||(46170754-46170795)
chr7 (380-420)||(33610704-33610744)
[»] chr2 (5 HSPs)
chr2 (379-479)||(6065401-6065501)
chr2 (381-433)||(16106651-16106703)
chr2 (381-433)||(21800619-21800671)
chr2 (379-420)||(10810507-10810548)
chr2 (379-452)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (381-420)||(29419718-29419757)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 37428339 - 37428695
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428339 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 37428438  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  37428439 ggcaagggaccactaaaaattttattatagatgtcgaaaattctcaacttgggaa-tggatgtttggtcatagaacaagtgattgtaccatgcagtttat 37428537  T
Q  211 ttgatcttaaaatgagaacctgtaaaaagtatttgatgcatgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37428538 ttgatcttaaaatgagaacctgtaaaaagtatttgatgcatgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaattggaagatctc 37428637  T
Q  311 cttgcaacttgttggaacttagatcaatgtgccaaatgtccttccatgtgtgtaagag 368  Q
    |||||||||||||| |||| ||||||| ||||||||| | |||||||| || ||||||    
T  37428638 cttgcaacttgttgaaactgagatcaacgtgccaaatatacttccatgagtttaagag 37428695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 37383199 - 37382975
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||| | |   | |||||||||||||||||||||||||||||| ||||||| | |||     
T  37383199 cacagaatcattatagtaattggacttacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgtt 37383100  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||| ||| |||||||||| |||||||  || |||||||||||||||||||||||||| |||||  |||| || |||||||  ||||| |||||||    
T  37383099 ggcaagggcccaataaaattgttgttagagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttat 37383000  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||| |||| ||||||||    
T  37382999 ttgatcttaaactgagcacctgtaa 37382975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 37434997 - 37435221
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||| |||     
T  37434997 cacagaatcattatagtaattgttcttacccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgtt 37435096  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||  |||||||||||||||    ||||||| |||||||| ||||| | ||| ||||| |||||  ||||||| ||||||| |||||  |||||||    
T  37435097 ggcaaggatccactaaaattgttaccgaagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagtttat 37435196  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||| |||| ||||||||    
T  37435197 ttgatcttaaactgagtacctgtaa 37435221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 37593492 - 37593696
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    |||||||||||||||||||   ||  |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37593492 acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37593591  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| ||||||||||||||  |||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || |||||    
T  37593592 gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt 37593691  T
Q  212 tgatc 216  Q
    |||||    
T  37593692 tgatc 37593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 37695883 - 37696087
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    |||||||||||||||||||   | | |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37695883 acagaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37695982  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| ||||||||||||||  |||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || |||||    
T  37695983 gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt 37696082  T
Q  212 tgatc 216  Q
    |||||    
T  37696083 tgatc 37696087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 37532387 - 37532592
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||   ||  |||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||| | |     
T  37532387 cacagaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatatt 37532486  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||| |||||||||||||| ||||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || ||||    
T  37532487 ggcaagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat 37532586  T
Q  211 ttgatc 216  Q
    ||||||    
T  37532587 ttgatc 37532592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 37823192 - 37823401
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| |||||||||||||||   ||| |||||||||||||||||||||| ||| ||||||||| ||| |    
T  37823192 acagaatcattgtagtaataagagtcacccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttg 37823291  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37823292 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37823391  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37823392 tgatcgtaaa 37823401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 37401870 - 37401661
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| ||||||||| | |   | |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37401870 acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37401771  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37401770 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37401671  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37401670 tgatcgtaaa 37401661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 37639034 - 37639243
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| ||||||||| | |   | |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37639034 acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37639133  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37639134 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37639233  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37639234 tgatcgtaaa 37639243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 37393730 - 37393526
Alignment:
Q  31 tggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaatt 130  Q
    |||| ||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| ||| ||| ||||| ||| |||||||| |||||||||||    
T  37393730 tggctttacccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaatt 37393631  T
Q  131 gttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacc 230  Q
    |||| ||||||  ||  ||||||||||||| |||||||||||||||||  ||||||| |||||||  ||||| || | |||||||| |||| | || |||    
T  37393630 gttactagagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacc 37393531  T
Q  231 tgtaa 235  Q
    |||||    
T  37393530 tgtaa 37393526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 37710846 - 37711001
Alignment:
Q  66 tcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaa 165  Q
    |||||||| ||||||||||||||||| ||| ||||||||| ||  |||||||| |||||||||||||| |||||||  || |||||||||||||||||||    
T  37710846 tcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaa 37710945  T
Q  166 atggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaa 221  Q
    ||| |||||||||  ||||||| ||||||| |||||| || |||||||||| ||||    
T  37710946 atgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaa 37711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 37702025 - 37702194
Alignment:
Q  66 tcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaa 165  Q
    ||||| ||||| |||||||||||||| ||| ||||||||| ||| |||||||| |||||||||||||| ||||||   || |||||||||||||| ||||    
T  37702025 tcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgttagaggcatcaaaaattctcaacttaggaa 37702124  T
Q  166 atggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacctgtaa 235  Q
    ||| |||||||||  ||||||||||||||| |||||| || | |||||||| |||| | || ||||||||    
T  37702125 atgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaa 37702194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37639719 - 37639836
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||| ||||| |||| |||||||||| || ||||||    
T  37639719 tgaagttgttatttgagagtaaaaagtatacaatgccatcaggtggaattggaagatgtccttgcaacatgttgaaactaagatcaatgtaccgaatgtc 37639818  T
Q  351 cttccatgtgtgtaagag 368  Q
    ||||||||||| ||||||    
T  37639819 cttccatgtgtttaagag 37639836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 37382648 - 37382531
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| |||||||||||||| | |||||||||| |||| || |||||||||||||||||||||||| |||| |||||||  ||   ||||||    
T  37382648 tgaagttgttgttcgagagtaaaaagtagtaaatgccataacgtgggattggaagatctccttgcaacttgttgaaactgagatcaacatgttgaatgtc 37382549  T
Q  351 cttccatgtgtgtaagag 368  Q
    | ||||||||||||||||    
T  37382548 cctccatgtgtgtaagag 37382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 37393199 - 37393082
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||||||| |||| || ||||||||   ||||||    
T  37393199 tgaagttgttgtttgagagtaaaaagtcttcaatgccatcaggtggaattggaagatcaccttgtaacttgttgaaactcaggtcaatgtgtataatgtc 37393100  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37393099 cttccatgagtttaagag 37393082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37711477 - 37711594
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    |||||||||| || |||||| ||||||||| ||||||| | |||||||| |||||||||||||||||| ||||| |||| |||||||||| || ||||||    
T  37711477 tgaagttgttatttgagagtgaaaagtattgaatgccagatggtggaattggaagatctccttgcaacatgttgaaactaagatcaatgtaccgaatgtc 37711576  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37711577 cttccatgagtttaagag 37711594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37823742 - 37823859
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| || |||| |  |||||||||    
T  37823742 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtcaacggaccaaatgtc 37823841  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37823842 cttccatgagtttaagag 37823859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 37401185 - 37401068
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    |||||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||| || || | || |  ||||||    
T  37401185 tgaagttgttatttgagagtgaaaagtattcaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtctaagtactgaatgtc 37401086  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37401085 cttccatgagtttaagag 37401068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37594177 - 37594294
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| |  ||||||| | |||| ||    
T  37594177 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaatctc 37594276  T
Q  351 cttccatgtgtgtaagag 368  Q
     ||||||| || ||||||    
T  37594277 attccatgagtttaagag 37594294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37696568 - 37696685
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| |||||| |||||||| |||||| | |||||||||| |||||||||||||| ||||||||| |||| || || | || |  ||||||    
T  37696568 tgaagttgttgtttgagagtgaaaagtatccaatgctagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtctaagtcctgaatgtc 37696667  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37696668 cttccatgagtttaagag 37696685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37702521 - 37702638
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||||| |||||||||| | ||| |||| || | ||||||   ||||||    
T  37702521 tgaagttgttgtttgagagtaaaaagtgtacaatgccatgaggtggaattggaagatgtccttgcaacattttgaaactcaggttaatgtgtataatgtc 37702620  T
Q  351 cttccatgtgtgtaagag 368  Q
    |||||||| || ||||||    
T  37702621 cttccatgagtttaagag 37702638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37532938 - 37533016
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaact 329  Q
    |||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||||||||| ||||    
T  37532938 tgaagttgttatttgagagtgaaaagtatccaatgccatcaggtggaattggaagatctccttgtaacttgttgaaact 37533016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 37401320 - 37401247
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37401320 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgttg 37401247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37639584 - 37639657
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37639584 tgaagttgttatttgagagtgaaaagtatttaatgccagaaggtggaattggaagatctccttgaaagttgttg 37639657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37711342 - 37711415
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37711342 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgttg 37711415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 37435549 - 37435637
Alignment:
Q  252 gaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgt 340  Q
    |||||||||||| ||||| |||||||||||||||||||  | |||||| ||||  ||||||||||| |||||| |||| || |||||||    
T  37435549 gaagttgttgtttgagagcaaaaagtattcaatgccatcggatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgt 37435637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 37413527 - 37413452
Alignment:
Q  293 gtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtccttccatgtgtgtaagag 368  Q
    ||||||| |||||||||||||||||||||||| |||| ||||| || || | ||| ||| ||||||||||||||||    
T  37413527 gtggaattggaagatctccttgcaacttgttgaaactgagatcgatatgtcgaatttccctccatgtgtgtaagag 37413452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 379 - 480
Target Start/End: Original strand, 6273241 - 6273342
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaacta 478  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |  ||||| ||||| || ||||  |||||||  |||||||    |||||||||||||    
T  6273241 gaataactcggttagatgactcggccttaagattaaatttttatatgtattgaaccagattaaatcggattgaatgaatgactcagacacttaaaaacta 6273340  T
Q  479 aa 480  Q
    ||    
T  6273341 aa 6273342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 37413899 - 37413814
Alignment:
Q  150 attctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||||||||||| |||||| ||  ||||||| ||||||| |||||| || |||||||||| |||| | || ||||||||    
T  37413899 attctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaa 37413814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37594042 - 37594115
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||| |||||||| ||||||||| ||| || |||||||| ||||||||| |||||||||||||| || ||||||    
T  37594042 tgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaagttgttg 37594115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37696433 - 37696506
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||| |||||||| ||||||||| ||| || |||||||| ||||||||| |||||||||||||| || ||||||    
T  37696433 tgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaaattgttg 37696506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 14351926 - 14351830
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaact 477  Q
    |||||||||||  ||||| ||||||||||||||||||||| | ||||||||| |  || ||||  | |||||| |||||||  ||||||||||||||    
T  14351926 ataactcggttatatgacccggtcttaagattaaatttttataggtatttaatcttattaaatagggttgaaccaatgactcgaccacttaaaaact 14351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 17644194 - 17644142
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    |||||||||||  ||||||||||||||||||||||| ||| | ||||||||||    
T  17644194 ataactcggttaaatgactcggtcttaagattaaatatttataggtatttaac 17644142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 32383878 - 32383804
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaac 453  Q
    ||||||||||||  |||||| |||||| |||||||||||||| | ||||||||| || || ||||  ||||||||    
T  32383878 gaataactcggtaagatgacccggtctcaagattaaatttttataggtatttaatcagattaaatcagattgaac 32383804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 18942364 - 18942416
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    ||||||| |||  ||||||||||||||||||||||| ||| | ||||||||||    
T  18942364 ataactcagttaaatgactcggtcttaagattaaatatttataggtatttaac 18942416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 35456622 - 35456674
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    |||||||||||  |||||| |||||||||||||||| ||| | ||||||||||    
T  35456622 ataactcggttaaatgacttggtcttaagattaaatatttataggtatttaac 35456674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 9e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 16843869 - 16843645
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||| || ||||||||| || | |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||  |||||||| |||     
T  16843869 cacagaatcgttgtagtaattgtccgtgcccatgtattgcaaaccaatctggctatcatccacattcatcattccttgaaagttctggatgcatgatgtt 16843770  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||  |||||||||||||| |||||||  || |||||||||||||| |||||||||||||||||  ||||||||||||||   ||||| || ||||    
T  16843769 ggcaaggtgccactaaaattgttgttagagacatcaaaaattctcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattat 16843670  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    | |||| ||||| ||| ||||||||    
T  16843669 tagatcgtaaaacgagtacctgtaa 16843645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 16846536 - 16846313
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||   |||||||| | ||||||||||||||||||||| |||| |||| |||     
T  16846536 cacagaatcattatagtaattgacctttcccatgtactgcaaaccagttttattatcattcgcgttcatcattccttgaaaattcttgatacatgatgtt 16846437  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    ||||| || ||||| || |||||||   ||||||| ||||||||||| || |||||||||||||||||  ||||||| ||||||| |||||  |||||||    
T  16846436 ggcaacggtccactgaatttgttatcgaagatgtccaaaattctcaa-tttggaaatggatgcttggtgctagaacatgtgattgaaccataaagtttat 16846338  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    |||| |||||| |||| || |||||    
T  16846337 ttgaccttaaactgagtacatgtaa 16846313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 24218604 - 24218380
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||  ||   |  |||||||||| |||||||||||||||||| ||| ||| | |||     
T  24218604 cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgtt 24218505  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||| ||| ||||  ||||| |||  |||||  ||| ||||||||| ||| |||||||  || |||||  ||||||||||||||  |||||| || | ||    
T  24218504 ggcacggggccacggaaattattaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgat 24218405  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    |||||| |||| |||| ||||||||    
T  24218404 ttgatcgtaaactgagtacctgtaa 24218380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 380 - 495
Target Start/End: Complemental strand, 43245705 - 43245591
Alignment:
Q  380 aataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaa 479  Q
    |||||||||||   ||||||||||||||| |||||||| || ||||||||||||||||| |||||| |||||||||||||| | | ||||||||||||||    
T  43245705 aataactcggtcatatgactcggtcttaatattaaattgttattggtatttaaccaaattaaatttaattgaactaatgac-tcatcacttaaaaactaa 43245607  T
Q  480 aatgtaatatgtatat 495  Q
    |||| |||||||||||    
T  43245606 aatgcaatatgtatat 43245591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 13428764 - 13428667
Alignment:
Q  397 actcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaaaatgtaatatgtatat 495  Q
    |||||||||||| ||||||||||| ||| |||| |||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  13428764 actcggtcttaatattaaatttttattgatattcaaccaaattaaatttgattgaactaatgactcga-cacttaaaaactaaaatgtaatatgtatat 13428667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 16843183 - 16843066
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| |||||  ||||||||| || |||||||| |||||| ||||  ||||||||||| |||||| |||| |||||||||| |||||||||    
T  16843183 tgaagttgttgtttgagagcgaaaagtattgaaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccaaatgtc 16843084  T
Q  351 cttccatgtgtgtaagag 368  Q
     |||||||||| ||||||    
T  16843083 attccatgtgtttaagag 16843066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 24218053 - 24217936
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||| |||||||||||||||||| |||| |||| |||    | ||| ||    
T  24218053 tgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtctccttgcaacttgttgaaactgagattaataattcgaatttc 24217954  T
Q  351 cttccatgtgtgtaagag 368  Q
    ||||||||||||||||||    
T  24217953 cttccatgtgtgtaagag 24217936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 16845982 - 16845877
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttggaacttagatcaatgtgccaaatgtc 350  Q
    ||||||||||||| ||||| |||||||||| ||||||||||  |||||| ||||  ||||||||||| |||||| |||| || |||||||| | ||||||    
T  16845982 tgaagttgttgtttgagagcaaaaagtatttaatgccataatatggaattggaatgtctccttgcaatttgttgaaactgaggtcaatgtgtcgaatgtc 16845883  T
Q  351 cttcca 356  Q
    ||||||    
T  16845882 cttcca 16845877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 16843318 - 16843245
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||||||||||| || ||||||    
T  16843318 tgaagttgttatttgagagtgaaaagtatacaatgccatcaggtggaattggaagatctccttgaaaattgttg 16843245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 10006742 - 10006678
Alignment:
Q  374 aaatagaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaat 438  Q
    |||| ||||||||||||| ||||| | |||||||||||||||||||| | |||||| ||||||||    
T  10006742 aaatcgaataactcggttagatgaattggtcttaagattaaatttttataggtattaaaccaaat 10006678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 4414530 - 4414582
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    |||||||| ||  ||||||||||||||||||||||| ||| | ||||||||||    
T  4414530 ataactcgattaaatgactcggtcttaagattaaatatttataggtatttaac 4414582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 14552668 - 14552843
Alignment:
Q  20 attatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaaggga 119  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||| ||| |||||||      
T  14552668 attatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtg 14552767  T
Q  120 ccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattg 195  Q
    |||||||||||||| |||||||  || |||||||||||||| ||||||| ||||||| |  ||||||| |||||||    
T  14552768 ccactaaaattgttgttagagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattg 14552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 51537177 - 51537138
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaattttt 420  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  51537177 ataactcggttagatgactcggtcttaagattaaattttt 51537138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 29727852 - 29727904
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    ||||||| ||| |||||||||||||||||||||||||||| | | ||||||||    
T  29727852 ataactcagttagatgactcggtcttaagattaaatttttatagctatttaac 29727904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 35054683 - 35054597
Alignment:
Q  395 tgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaaaa 481  Q
    ||||||||||||| |||||||||||| |  ||||||||| | || ||||| ||||||||  |||||    |||||||||||||||||    
T  35054683 tgactcggtcttacgattaaatttttatatgtatttaactagattaaattggattgaaccgatgacccggccacttaaaaactaaaa 35054597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 26403632 - 26403518
Alignment:
Q  374 aaatagaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaa 473  Q
    |||||||||||||||||  ||||||| |||| ||||||| ||||||| |||||||||||       |||||||| | |||||||||||  ||||||||||    
T  26403632 aaatagaataactcggtcagatgacttggtcgtaagattcaatttttattggtatttaa-------aaatttgagtcaactaatgactcgaccacttaaa 26403540  T
Q  474 aactaaaatgtaatatgtatat 495  Q
    ||||||||||||||||||||||    
T  26403539 aactaaaatgtaatatgtatat 26403518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 28761669 - 28761630
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaattttt 420  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  28761669 ataactcggttaggtgactcggtcttaagattaaattttt 28761630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 481
Target Start/End: Complemental strand, 38712212 - 38712111
Alignment:
Q  380 aataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaa 479  Q
    |||||||||||  | ||| ||||||||| |||||||||||| |  ||||||||| | || ||||  ||||||||  ||||||   |||||||||||||||    
T  38712212 aataactcggtaagttgattcggtcttacgattaaatttttatatgtatttaactagattaaatcggattgaaccgatgactcggccacttaaaaactaa 38712113  T
Q  480 aa 481  Q
    ||    
T  38712112 aa 38712111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 32493157 - 32493073
Alignment:
Q  397 actcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaaaa 481  Q
    ||||||||||| |||||||||||| |  ||||||||| | || ||||  ||||||||  ||||||   |||||||||||||||||    
T  32493157 actcggtcttacgattaaatttttatgtgtatttaactagattaaatcggattgaacccatgactcggccacttaaaaactaaaa 32493073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 481
Target Start/End: Complemental strand, 4917 - 4816
Alignment:
Q  380 aataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaa 479  Q
    |||||||| ||| |||||  ||||||||||||||||||||| | |||||||||||| || ||||  ||||||||| ||||||   |||||||||||||||    
T  4917 aataactcagttagatgatccggtcttaagattaaatttttataggtatttaaccagattaaatcggattgaactgatgactcagccacttaaaaactaa 4818  T
Q  480 aa 481  Q
    ||    
T  4817 aa 4816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 481
Target Start/End: Complemental strand, 4937 - 4836
Alignment:
Q  380 aataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaactaa 479  Q
    |||||||| ||| |||||  ||||||||||||||||||||| | |||||||||||| || ||||  ||||||||| ||||||   |||||||||||||||    
T  4937 aataactcagttagatgatccggtcttaagattaaatttttataggtatttaaccagattaaatcggattgaactgatgactcagccacttaaaaactaa 4838  T
Q  480 aa 481  Q
    ||    
T  4837 aa 4836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 476
Target Start/End: Original strand, 3794258 - 3794355
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaac 476  Q
    ||||||||||||| |||||| || |||||||||||||||||| | ||||||||| || || ||||  ||||||||| ||||||  || ||||||||||    
T  3794258 gaataactcggttagatgacccgatcttaagattaaatttttataggtatttaatcatattaaatcggattgaactgatgactcgactacttaaaaac 3794355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 3014162 - 3014060
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaacta 478  Q
    |||||||||||||  ||||| ||||||||||||||||||||| | |||||||||| | || ||||  ||||||||   |||||  || ||||||||||||    
T  3014162 gaataactcggttaaatgacccggtcttaagattaaatttttataggtatttaactatattaaatcggattgaacccgtgactcgactacttaaaaacta 3014063  T
Q  479 aaa 481  Q
    |||    
T  3014062 aaa 3014060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 32364236 - 32364298
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaat 443  Q
    ||||||||||| |||||||||||||||||||||||||||| |   ||||||||||||| ||||    
T  32364236 ataactcggttagatgactcggtcttaagattaaatttttataactatttaaccaaattaaat 32364298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 481
Target Start/End: Original strand, 24638812 - 24638914
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaacta 478  Q
    ||||||||||||  | ||||||||||||| |||||||||||| |  ||||||||| | || ||||  ||||||||  ||||||   ||||||||||||||    
T  24638812 gaataactcggtaagttgactcggtcttacgattaaatttttatatgtatttaactagattaaataggattgaaccgatgactcggccacttaaaaacta 24638911  T
Q  479 aaa 481  Q
    |||    
T  24638912 aaa 24638914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 481
Target Start/End: Original strand, 44410825 - 44410927
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaacta 478  Q
    ||||||||||| | ||||||||||| |||||||||||| ||| | |||| ||||||  || ||||  |||||||| |||||||   |||||||||||| |    
T  44410825 gaataactcggctagatgactcggttttaagattaaatctttataggtaattaacccgattaaatcggattgaaccaatgactcggccacttaaaaacaa 44410924  T
Q  479 aaa 481  Q
    |||    
T  44410925 aaa 44410927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 481
Target Start/End: Complemental strand, 40960207 - 40960100
Alignment:
Q  374 aaatagaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaa 473  Q
    |||| |||||||||||||  ||||| || |||||||||||| ||||| | ||||||||||||  | | ||  ||||||||  ||||||| |  |||||||    
T  40960207 aaattgaataactcggttacatgacccgatcttaagattaattttttataggtatttaaccaggttagatcggattgaaccgatgacttgattacttaaa 40960108  T
Q  474 aactaaaa 481  Q
    ||||||||    
T  40960107 aactaaaa 40960100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 35331681 - 35331793
Alignment:
Q  384 actcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatg-actttaccacttaaaaactaaaat 482  Q
    ||||||||  |||||||  |||||||||||||||||| ||   |||||||||||| ||||||||||||| |||||  | |   |||||| ||||||||||    
T  35331681 actcggttaaatgactccatcttaagattaaatttttattaagatttaaccaaattaaatttgattgaattaatgtccgtcgacacttagaaactaaaat 35331780  T
Q  483 gtaatatgtatat 495  Q
    |||||||||||||    
T  35331781 gtaatatgtatat 35331793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 31813601 - 31813676
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaact 454  Q
    ||||||||||||| |||||  |||||||||| |||||||||| | |||||||||||| || ||||| |||||||||    
T  31813601 gaataactcggttagatgatccggtcttaaggttaaatttttataggtatttaaccatattaaattggattgaact 31813676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 5419006 - 5419080
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaac 453  Q
    |||||||||||||| ||||| | ||||||||||||||||||| | |||||||||||| || | ||| ||||||||    
T  5419006 gaataactcggttgtatgaccctgtcttaagattaaatttttataggtatttaaccagattagattggattgaac 5419080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 46170754 - 46170795
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaattttt 420  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  46170754 gaataactcggttagatgactcggccttaagattaaattttt 46170795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 33610704 - 33610744
Alignment:
Q  380 aataactcggttggatgactcggtcttaagattaaattttt 420  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  33610704 aataactcggttagatgactcgtttttaagattaaattttt 33610744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 6065501 - 6065401
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaactaatgactttaccacttaaaaacta 478  Q
    ||||||||||||| ||||||| || ||||||| ||| ||||| | ||||||||| || || ||||  ||||||||  ||||||   ||||||||||||||    
T  6065501 gaataactcggtttgatgacttggccttaagaataattttttataggtatttaatcagattaaatcggattgaaccgatgactcggccacttaaaaacta 6065402  T
Q  479 a 479  Q
    |    
T  6065401 a 6065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 16106703 - 16106651
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    ||||||||||| ||||||||| |||||||||||||||||| | | ||||||||    
T  16106703 ataactcggttagatgactcgatcttaagattaaatttttatagctatttaac 16106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 21800671 - 21800619
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaatttttgttggtatttaac 433  Q
    |||||||||||  ||||||||||||||||||||||| ||| | ||||||||||    
T  21800671 ataactcggttaaatgactcggtcttaagattaaatatttataggtatttaac 21800619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 10810548 - 10810507
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaattttt 420  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  10810548 gaataactcggttgtatgacccggtcgtaagattaaattttt 10810507  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 26606644 - 26606717
Alignment:
Q  379 gaataactcggttggatgactcggtcttaagattaaatttttgttggtatttaaccaaataaaatttgattgaa 452  Q
    ||||||||||||| |||||| |  |||||||||||||||||| | |||||| ||||| || | ||| |||||||    
T  26606644 gaataactcggttagatgacccaatcttaagattaaatttttataggtattgaaccagattagattggattgaa 26606717  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 29419757 - 29419718
Alignment:
Q  381 ataactcggttggatgactcggtcttaagattaaattttt 420  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  29419757 ataactcggttaggtgactcggtcttaagattaaattttt 29419718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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