View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3609_low_5 (Length: 370)

Name: NF3609_low_5
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3609_low_5
NF3609_low_5
[»] chr6 (6 HSPs)
chr6 (6-331)||(24992451-24992783)
chr6 (203-322)||(23260663-23260784)
chr6 (203-322)||(34636231-34636352)
chr6 (203-322)||(25005188-25005309)
chr6 (264-321)||(13777247-13777304)
chr6 (203-320)||(32450348-32450467)
[»] chr8 (4 HSPs)
chr8 (203-300)||(35839167-35839266)
chr8 (261-305)||(40841550-40841594)
chr8 (262-300)||(22816485-22816523)
chr8 (203-268)||(22816401-22816466)
[»] chr2 (6 HSPs)
chr2 (203-305)||(1193659-1193763)
chr2 (214-305)||(29270696-29270787)
chr2 (264-321)||(28267692-28267749)
chr2 (246-305)||(44788576-44788635)
chr2 (264-321)||(12774954-12775011)
chr2 (264-322)||(32735438-32735498)
[»] chr5 (7 HSPs)
chr5 (203-300)||(27026687-27026786)
chr5 (214-322)||(536774-536884)
chr5 (246-305)||(6308684-6308743)
chr5 (203-254)||(6308759-6308810)
chr5 (267-310)||(40687600-40687643)
chr5 (216-321)||(4558070-4558178)
chr5 (203-255)||(536927-536979)
[»] chr4 (8 HSPs)
chr4 (214-321)||(28969279-28969386)
chr4 (248-321)||(41868614-41868687)
chr4 (246-305)||(69311-69370)
chr4 (203-268)||(69373-69438)
chr4 (135-236)||(41868764-41868866)
chr4 (267-320)||(55162182-55162235)
chr4 (267-320)||(40458951-40459004)
chr4 (204-321)||(49499057-49499176)
[»] chr3 (8 HSPs)
chr3 (203-305)||(17542752-17542854)
chr3 (203-322)||(5004805-5004926)
chr3 (203-305)||(9104235-9104337)
chr3 (203-322)||(46404647-46404768)
chr3 (203-322)||(16975298-16975419)
chr3 (203-322)||(8730845-8730964)
chr3 (203-322)||(9082732-9082851)
chr3 (265-322)||(16475322-16475381)
[»] scaffold0413 (1 HSPs)
scaffold0413 (203-322)||(8884-9005)
[»] chr1 (7 HSPs)
chr1 (203-321)||(9537441-9537559)
chr1 (264-315)||(18474080-18474131)
chr1 (246-305)||(21264718-21264779)
chr1 (230-322)||(35762164-35762258)
chr1 (267-320)||(8421619-8421672)
chr1 (264-322)||(37667296-37667356)
chr1 (262-305)||(6836013-6836058)
[»] chr7 (8 HSPs)
chr7 (203-300)||(9993357-9993454)
chr7 (203-322)||(15874022-15874143)
chr7 (264-321)||(48654376-48654433)
chr7 (203-321)||(22077678-22077796)
chr7 (203-321)||(21491581-21491703)
chr7 (203-279)||(11036406-11036485)
chr7 (267-320)||(49170428-49170481)
chr7 (203-322)||(12196655-12196772)
[»] scaffold1838 (1 HSPs)
scaffold1838 (203-321)||(221-339)
[»] scaffold0013 (2 HSPs)
scaffold0013 (262-300)||(243168-243208)
scaffold0013 (203-239)||(243119-243155)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 24992783 - 24992451
Alignment:
Q  6 ttagcaactatatcccagaggccatacatattcatatccttttcttaataatttatttaagaataattttgagtactgtaacattattttctttctctaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24992783 ttagcaactatatcccagaggccatacatattcatatccttttcttaataatttatttaagaataattttgactactgtaacattattttctttctctaa 24992684  T
Q  106 tttatcaaaaatctaacattt--------aacatcacaaacatataaagcataatgaaataaaatgagatatattatttcacatcaaatcctcataaaca 197  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24992683 tttatcaaaaatctaacatttctttatctaacatcacaaacatataaagcataatgaaataaaatgagatatattatttcagatcaaatcctcataaaca 24992584  T
Q  198 cataccatataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaaga 297  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  24992583 cataccatataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttttcttttcaaaa-acaaga 24992485  T
Q  298 atttctacttctaattcataacatatctctagta 331  Q
    |||||||||| |||||||||||||||| ||||||    
T  24992484 atttctacttataattcataacatatccctagta 24992451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 23260663 - 23260784
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  23260663 catataaaatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaagaatc 23260762  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  23260763 tctacctctaattcataacata 23260784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 34636352 - 34636231
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  34636352 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 34636253  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  34636252 tctacctctaattcataacata 34636231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 25005309 - 25005188
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |     ||||||| |||||||  ||||||||| ||||||||||     
T  25005309 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaagaatc 25005210  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  25005209 tctacctctaattcataacata 25005188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 13777247 - 13777304
Alignment:
Q  264 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 321  Q
    |||||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  13777247 atattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacat 13777304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 32450348 - 32450467
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| ||||||||||||   |||| |||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  32450348 catataaaatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 32450447  T
Q  301 tctacttctaattcataaca 320  Q
    ||||| ||||||||||||||    
T  32450448 tctacctctaattcataaca 32450467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 35839266 - 35839167
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 300  Q
    ||||||||||| |||||||||||||||| |||||||| | || ||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||    
T  35839266 catataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 35839167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 40841550 - 40841594
Alignment:
Q  261 gaaatattttaattgtttttcttttcaaaagacaagaatttctac 305  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  40841550 gaaatatttttattgtttttcttttcaaaagacaagaattgctac 40841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 22816485 - 22816523
Alignment:
Q  262 aaatattttaattgtttttcttttcaaaagacaagaatt 300  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22816485 aaatattttaattgtttttcttttcaagagacaagaatt 22816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 22816401 - 22816466
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatt 268  Q
    |||||||||||  ||||||||||||||| |||||||| | || ||||||||| ||||  |||||||    
T  22816401 catataaaactcgattaaaataatcactcttataaaatattagattttaccacgtaagaaaatatt 22816466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 1193763 - 1193659
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 300  Q
    ||||||||||| |||||||||||||||| |||||||| | || | ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||    
T  1193763 catataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 1193664  T
Q  301 tctac 305  Q
     ||||    
T  1193663 gctac 1193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 29270787 - 29270696
Alignment:
Q  214 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 305  Q
    ||||||||||||| | |||||||||| | |||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||| ||||    
T  29270787 taattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttttcttttcaaaagacaagaattgctac 29270696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 28267692 - 28267749
Alignment:
Q  264 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 321  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  28267692 atattttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacat 28267749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 44788635 - 44788576
Alignment:
Q  246 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 305  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  44788635 attttaccacgtaagaaaatattttaattgtttttcttttcaaaagacaataattactac 44788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 12774954 - 12775011
Alignment:
Q  264 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 321  Q
    |||||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  12774954 atattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacat 12775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 32735438 - 32735498
Alignment:
Q  264 atattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 322  Q
    |||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  32735438 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 32735498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 27026786 - 27026687
Alignment:
Q  203 catataaaacttaattaaaataatcact-tttataaaagaataa-attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatt 300  Q
    ||||||||| | |||||||||||||||| ||||||||| ||| | ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  27026786 catataaaaatcaattaaaataatcactctttataaaaaaattagattttaccacgtaaagaaatatattaattgtttttcttttcaaaagacaagaatt 27026687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 536884 - 536774
Alignment:
Q  214 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatttctacttctaa 311  Q
    |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| |||||||||| ||||| |||||    
T  536884 taattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaa 536785  T
Q  312 ttcataacata 322  Q
    |||||||||||    
T  536784 ttcataacata 536774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 6308743 - 6308684
Alignment:
Q  246 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 305  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||| ||||    
T  6308743 attttaccacgtaagaaaatattttaattatttttcttttcaagagacaagaattgctac 6308684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 6308810 - 6308759
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttacca 254  Q
    ||||||||||| ||||||||||||||||||||||||| | || |||||||||    
T  6308810 catataaaactcaattaaaataatcacttttataaaatattagattttacca 6308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 40687643 - 40687600
Alignment:
Q  267 ttttaattgtttttcttttcaaaagacaagaatttctacttcta 310  Q
    |||||||| |||||||||| |||||||||||||| |||||||||    
T  40687643 ttttaattatttttctttttaaaagacaagaattgctacttcta 40687600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 4558070 - 4558178
Alignment:
Q  216 attaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt---tcttttcaaaagacaagaatttctacttctaat 312  Q
    |||||| |||| |||||||||||||  ||||||||||||| |||    |||||||| || ||||   |||| |||| |||||||||| ||||| |||||     
T  4558070 attaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaa 4558169  T
Q  313 tcataacat 321  Q
    |||||||||    
T  4558170 tcataacat 4558178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 536979 - 536927
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccat 255  Q
    |||||||||  |||||||| |||| |||||||||||||  |||||||||||||    
T  536979 catataaaatataattaaactaataacttttataaaaggttaaattttaccat 536927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 28969279 - 28969386
Alignment:
Q  214 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctacttctaatt 313  Q
    |||||||| |||| ||||||||||||   ||||||||||||| |||   ||||||||| ||||||||||| |||| |||||||||||||||| |||||||    
T  28969279 taattaaactaataacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaatt 28969378  T
Q  314 cataacat 321  Q
    ||||||||    
T  28969379 cataacat 28969386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 41868687 - 41868614
Alignment:
Q  248 tttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 321  Q
    ||||||||||||  | |||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  41868687 tttaccatgtaaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacat 41868614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 69370 - 69311
Alignment:
Q  246 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 305  Q
    ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||    
T  69370 attttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaattgctac 69311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 69438 - 69373
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatt 268  Q
    ||||||||||| ||||||||||||||||||||||||| | || ||||||||| ||||  |||||||    
T  69438 catataaaactcaattaaaataatcacttttataaaatattagattttaccacgtaagaaaatatt 69373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 41868866 - 41868764
Alignment:
Q  135 aaacatataaagcataatgaaataaaatgagatatattatttcacatcaaatcctcataaacacataccatataaaacttaattaaa-ataatcactttt 233  Q
    ||||||||||| || ||||||||||||| | |||||| ||| ||||||| || |||||| |||   | |||||||||| ||| |||| ||||||||||||    
T  41868866 aaacatataaatcagaatgaaataaaataaaatatatcattccacatcacattctcatatacaaccatcatataaaacataaataaagataatcactttt 41868767  T
Q  234 ata 236  Q
    |||    
T  41868766 ata 41868764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 55162235 - 55162182
Alignment:
Q  267 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 320  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  55162235 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 55162182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 40459004 - 40458951
Alignment:
Q  267 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 320  Q
    |||||||| |||||||||| |||||||||||||| |||| |||| || ||||||    
T  40459004 ttttaattatttttctttttaaaagacaagaattgctacctctacttaataaca 40458951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 49499176 - 49499057
Alignment:
Q  204 atataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatttta--attgtttttcttttcaaaagacaagaattt 301  Q
    ||||||||  |||||||| |||| | |||||||||||  |||||||||| || |||    ||||||||   || |||||||| |||| |||||||||| |    
T  49499176 atataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttttcttctcaacagacaagaatct 49499077  T
Q  302 ctacttctaattcataacat 321  Q
    | || |||||||||||||||    
T  49499076 ccacctctaattcataacat 49499057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 17542752 - 17542854
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    ||||||||||| ||||||||||| |||| ||| |||| | || ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| |    
T  17542752 catataaaactcaattaaaataaccactcttagaaaatattagattttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaattgc 17542851  T
Q  303 tac 305  Q
    |||    
T  17542852 tac 17542854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 5004805 - 5004926
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||| ||||| |||    |||||||| |||||||  ||||||||||||||||||||     
T  5004805 catataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatc 5004904  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  5004905 tctacctctaattcataacata 5004926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 9104337 - 9104235
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    ||||||| ||| |||||||||||||| | |||||||| | || |||||||||  | | |||||||||| ||||||||||||||||||||||||||||| |    
T  9104337 catataagactcaattaaaataatcaatcttataaaatattagattttaccacattaagaaatatttttattgtttttcttttcaaaagacaagaattgc 9104238  T
Q  303 tac 305  Q
    |||    
T  9104237 tac 9104235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 46404647 - 46404768
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  46404647 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 46404746  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  46404747 tctacctctaattcataacata 46404768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 16975419 - 16975298
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| | ||||||||     
T  16975419 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacaaacaagaatc 16975320  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  16975319 tctacctctaattcataacata 16975298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 8730964 - 8730845
Alignment:
Q  203 catataaaacttaattaaaat-aatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaattt 301  Q
    |||||||||| |||| | ||| ||| |||||||||||||| ||||||||||| || ||  | | |||||| || |||||||||| ||||||||||||||     
T  8730964 catataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaatta 8730866  T
Q  302 ctacttctaattcataacata 322  Q
    | ||| ||| || ||||||||    
T  8730865 ccactactatttaataacata 8730845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 9082851 - 9082732
Alignment:
Q  203 catataaaacttaattaaaat-aatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaattt 301  Q
    |||||||||| |||| | ||| ||| |||||||||||||| ||||||||||| || ||  | | |||||| || |||||||||| ||||||||||||||     
T  9082851 catataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaatta 9082753  T
Q  302 ctacttctaattcataacata 322  Q
    | ||| ||| || ||||||||    
T  9082752 ccactactatttaataacata 9082732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 16475381 - 16475322
Alignment:
Q  265 tattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 322  Q
    ||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 16475322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 9005 - 8884
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| ||| |||||||||  ||||||||||||||| |    |||||||| |||||||  ||||||||| |||||||||||    
T  9005 catataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatt 8906  T
Q  301 tctacttctaattcataacata 322  Q
    | ||| ||||||||||||||||    
T  8905 tatacctctaattcataacata 8884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 9537441 - 9537559
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    |||||||||  |||||||| |||| |||||||||||||  |||||||||| || |||    |||||||| ||||||||||| |||| |||||||||| |     
T  9537441 catataaaatataattaaactaataacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaatcta 9537540  T
Q  303 tacttctaattcataacat 321  Q
    ||| |||||||||||||||    
T  9537541 tacctctaattcataacat 9537559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 18474080 - 18474131
Alignment:
Q  264 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattca 315  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  18474080 atattttaattgtttttctttccaaaagacaagaatttgtacttctaattca 18474131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 21264718 - 21264779
Alignment:
Q  246 attttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatttctac 305  Q
    ||||||||||||||  |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctac 21264779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 35762164 - 35762258
Alignment:
Q  230 ttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 322  Q
    |||||||||||  ||||||||||||| |||    |||||||| |||||||  ||||||||| | |||||||| ||||| ||||||||||||||||    
T  35762164 ttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacata 35762258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 8421672 - 8421619
Alignment:
Q  267 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 320  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  8421672 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 8421619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 37667296 - 37667356
Alignment:
Q  264 atattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 322  Q
    |||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  37667296 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 37667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 6836058 - 6836013
Alignment:
Q  262 aaatattttaattgtttt--tcttttcaaaagacaagaatttctac 305  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  6836058 aaatattttaattgttttcttcttttcaaaagacaagaattgctac 6836013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 9993454 - 9993357
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 300  Q
    ||||||||||| ||||||||  |||||| |||||||| | || |||||||||| |||  |||||||||||||||||  ||||||||||||||||||||||    
T  9993454 catataaaactcaattaaaa--atcactcttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaatt 9993357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 15874022 - 15874143
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| | ||||||||     
T  15874022 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaagaatc 15874121  T
Q  301 tctacttctaattcataacata 322  Q
    ||||| ||||||||||||||||    
T  15874122 tctacctctaattcataacata 15874143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 48654376 - 48654433
Alignment:
Q  264 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 321  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  48654376 atattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacat 48654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 22077796 - 22077678
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    |||||||||  |||||||| |||| ||||||  ||| |  ||||||||||||| |||    |||||||| ||||||||||| | || |||||||||| ||    
T  22077796 catataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatattttagttgtttttcttcttaacagacaagaatctc 22077697  T
Q  303 tacttctaattcataacat 321  Q
    ||| |||||||||||||||    
T  22077696 tacctctaattcataacat 22077678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 21491581 - 21491703
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt----ttcttttcaaaagacaagaa 298  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| |||    |||||||| || |||    ||||||||||  ||||||||    
T  21491581 catataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaa 21491680  T
Q  299 tttctacttctaattcataacat 321  Q
    | ||||| |||||||||||||||    
T  21491681 tctctacctctaattcataacat 21491703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 11036406 - 11036485
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatga---aatattttaattgtttt 279  Q
    ||||||||||| |||||||||||||| | |||||||| | || ||||||||||||||  |   |||||||||||||||||    
T  11036406 catataaaactcaattaaaataatcattcttataaaatattagattttaccatgtaaataaataatattttaattgtttt 11036485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 49170428 - 49170481
Alignment:
Q  267 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 320  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  49170428 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 49170481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 12196655 - 12196772
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    |||||||||| | ||||||||| |||| |||| |||||| ||| ||| |||  ||||  | | ||||||||| |||||||||| |||||||||||||| |    
T  12196655 catataaaacattattaaaatattcacatttagaaaagattaattttcacc--gtaaaaatacattttaattatttttctttttaaaagacaagaattgc 12196752  T
Q  303 tacttctaattcataacata 322  Q
    |||  ||| || ||||||||    
T  12196753 taccactatttaataacata 12196772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 339 - 221
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 302  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| ||     ||||||||||| |||||||||| || | |||||||| ||    
T  339 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatttatattttaattatttttctttttaacaaacaagaatctc 240  T
Q  303 tacttctaattcataacat 321  Q
    ||  |||||||||||||||    
T  239 tatctctaattcataacat 221  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 243168 - 243208
Alignment:
Q  262 aaatattttaattgtttt--tcttttcaaaagacaagaatt 300  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  243168 aaatattttaattgttttcttcttttcaaaagacaagaatt 243208  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 243119 - 243155
Alignment:
Q  203 catataaaacttaattaaaataatcacttttataaaa 239  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  243119 catataaaactcaattaaaataatcactcttataaaa 243155  T

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