View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3609_low_6 (Length: 290)
Name: NF3609_low_6
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3609_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 41597133 - 41596873
Alignment:
| Q |
11 |
catcactaatattactattactcaaattcaaaccatgatttggaacaataaattgagacttcactgaattaaaaccagaatcaccaccagaaactggtgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41597133 |
catcactaatattactattactcaaattcaaaccatgatttggaacaataaattgagacttcactgaattaaaaccagaatcaccaccagaaactggtgt |
41597034 |
T |
|
| Q |
111 |
atcaggtgaaagaggctttaactcattagaactagaactattaccagaatcagtagtaacacaacaactgctattaggaatctcaagaacatcaagaggg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41597033 |
atcaggtgaaagaggctttaactcattagaactagaactattaccagaatcagtagtaacacaacaagtgctattaggaatctcaagaacatcaagaggg |
41596934 |
T |
|
| Q |
211 |
tgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41596933 |
tgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtat |
41596873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 27326226 - 27326137
Alignment:
| Q |
179 |
tgctattaggaatctcaagaacatcaagagggtgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagta |
270 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
27326226 |
tgctactaggaatctcaagaacatgaagagggtgtgaattaggtgcaaga--caaatttaattctaaagcatcaaagaaaattttctcagta |
27326137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University