View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3609_low_8 (Length: 245)
Name: NF3609_low_8
Description: NF3609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3609_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 52103387 - 52103603
Alignment:
| Q |
13 |
tcatcacgttaaaaaggagataaatatttgttatcctgtcatttcggtagtgtttatttcaagagttttattgtcatctaaaatcttcttatgcattcat |
112 |
Q |
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| T |
52103387 |
tcatcacgttaaaaaggagataaatatttgttatcctgtcatttcggtagtgtttatttcaagagttttattgtcatctaaaatcttcttatgcattcat |
52103486 |
T |
|
| Q |
113 |
ccaatttaatcatttttatagtaccatttatattattatataggatcatttctaaaaatatattcacaaatatttatgtggtatgatttgattgaataca |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52103487 |
ccaatttaatcatttttatattaccatttatattattatataggataatttttaaaaatatattcacaaatatttatatggtatgatttgattgaataca |
52103586 |
T |
|
| Q |
213 |
tacgtgaaaatgtttac |
229 |
Q |
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||||| ||||||||||| |
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| T |
52103587 |
tacgtaaaaatgtttac |
52103603 |
T |
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