View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3610_high_2 (Length: 403)

Name: NF3610_high_2
Description: NF3610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3610_high_2
NF3610_high_2
[»] chr2 (3 HSPs)
chr2 (218-400)||(4571054-4571236)
chr2 (218-357)||(9746779-9746918)
chr2 (247-344)||(36770167-36770264)
[»] chr1 (1 HSPs)
chr1 (261-395)||(24622902-24623036)
[»] chr8 (1 HSPs)
chr8 (268-357)||(9264527-9264616)
[»] chr4 (6 HSPs)
chr4 (268-357)||(33471674-33471763)
chr4 (218-357)||(44775560-44775699)
chr4 (1-213)||(31026796-31027015)
chr4 (80-213)||(31031800-31031936)
chr4 (1-93)||(31016875-31016967)
chr4 (2-43)||(31031934-31031975)
[»] chr3 (4 HSPs)
chr3 (268-357)||(11776130-11776219)
chr3 (252-357)||(28091622-28091727)
chr3 (269-395)||(9743008-9743134)
chr3 (250-357)||(13528654-13528756)
[»] chr6 (1 HSPs)
chr6 (272-356)||(17350691-17350775)
[»] chr5 (1 HSPs)
chr5 (252-357)||(5180224-5180329)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 218 - 400
Target Start/End: Complemental strand, 4571236 - 4571054
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4571236 tatgtttcaaatagacagaagaaaaaaaacaaattgcagagtcctagagaatcgaaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 4571137  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttagattgattctcttttgctttaattctttatgcttgtgtcttctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4571136 cttataaatcatgatgtgtatgccttggtttaggctttagattgattctctgttgctttaattctttgtgcttgtgtcttctt 4571054  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 9746779 - 9746918
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    ||||||||||||| |||||||        |||| ||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||| || ||||    
T  9746779 tatgtttcaaataaacagaagaagaaaaacaaactgcagagtcctagaggatcggaaaataagtgcattcacactcgtgctaagagtggcatttcaaaag 9746878  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    | |||||||||||||||||||| |||| | | ||||||||    
T  9746879 catataaatcatgatgtgtatggcttgatcttggctttag 9746918  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 36770167 - 36770264
Alignment:
Q  247 caaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttg 344  Q
    |||| ||||||||||||||| |||| ||||| |||||||||| ||||| |||||||||||||| || ||||| |||||| ||||||||||||| ||||    
T  36770167 caaactgcagagtcctagaggatcgaaaaataagtgcattcacactcgtgctaagagtggcatttcaaaagcctataaaacatgatgtgtatggcttg 36770264  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 24622902 - 24623036
Alignment:
Q  261 ctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagatt 360  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  24622902 ctagaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaaacatgatgtgtatgccttggtttaggctttagttt 24623001  T
Q  361 gattctcttttgctttaattctttatgcttgtgtc 395  Q
      |||||| |||||||  |||||| || |||||||    
T  24623002 tgttctctgttgctttgcttctttgtgtttgtgtc 24623036  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 9264527 - 9264616
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9264527 atcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagactttag 9264616  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 33471674 - 33471763
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33471674 atcggaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 33471763  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 44775560 - 44775699
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    |||||||||||||||||||||        ||||||||| |||||||||| ||| |||| ||| ||||||||||| || ||||||| || ||||||||| |    
T  44775560 tatgtttcaaatagacagaagaaaaaaaacaaattgcaaagtcctagaggatcagaaattgattgcattcaaacccgtgctaagaatgacatatctaagg 44775659  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44775660 cttataaatcatgatgtgtatgccttggtttaggctttag 44775699  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 31027015 - 31026796
Alignment:
Q  1 aactcaacaatgatgcaccacaggaattcgtttgctcggaagcacaaggttttggcaactgaagattaggtacgaccacagccacatccacattc----- 95  Q
    ||||||||| ||||||||||||| ||| ||||||| | ||||| |||| ||||||||| |||||||||| | | |||||| ||| |||||   ||         
T  31027015 aactcaacagtgatgcaccacagaaatccgtttgcacagaagcgcaagtttttggcaattgaagattagtttctaccacaaccatatccattatccgcga 31026916  T
Q  96 --attcagttgattaatctgatcataagctgtaatgactggatttcagctgcacttccattcaactttgaaactacaactagcttttcatttagtggcac 193  Q
      |||||  |||||||   ||||||||||||||  || |  |||||||||||||||||| |||||||||||| |||||| || ||| ||||  |||| ||    
T  31026915 tgattcatctgattaaatagatcataagctgtagcgatttcatttcagctgcacttccaatcaactttgaaattacaacaaggtttgcattaggtggtac 31026816  T
Q  194 tggtcgacaatggttggaat 213  Q
    ||||| ||||||||||||||    
T  31026815 tggtcaacaatggttggaat 31026796  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 31031936 - 31031800
Alignment:
Q  80 agccacatccacattcattcagttgattaatctgatcataagctgtaatgactggatttcagctgcacttccattcaactttgaaactacaactagcttt 179  Q
    ||||||||||||| | |||||  |||||||   ||||||||||||||   |||| |||||||||| ||||||||||||||||||||||||| | || |||    
T  31031936 agccacatccacaatgattcatctgattaaatagatcataagctgtagcaactgcatttcagctggacttccattcaactttgaaactacagcaaggttt 31031837  T
Q  180 tcatttagtggcac---tggtcgacaatggttggaat 213  Q
     ||||| |||| ||   ||||| ||||||||||||||    
T  31031836 gcatttggtggtactggtggtcaacaatggttggaat 31031800  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31016967 - 31016875
Alignment:
Q  1 aactcaacaatgatgcaccacaggaattcgtttgctcggaagcacaaggttttggcaactgaagattaggtacgaccacagccacatccacat 93  Q
    ||||||||||||||||||||||| ||||| | | | |  |||| |||| ||||||||| |||||||||||||| |||||||||||| ||||||    
T  31016967 aactcaacaatgatgcaccacagaaattcatcttcacaaaagcgcaagtttttggcaattgaagattaggtactaccacagccacagccacat 31016875  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 31031975 - 31031934
Alignment:
Q  2 actcaacaatgatgcaccacaggaattcgtttgctcggaagc 43  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  31031975 actcaacaatgatgcaccacaggaattcgtttgctaggaagc 31031934  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 11776130 - 11776219
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11776130 atcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgtcttggtttaggctttag 11776219  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 28091622 - 28091727
Alignment:
Q  252 tgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagg 351  Q
    |||||||||||| || |||| |||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28091622 tgcagagtcctaaaggatcgaaaaatgagtgcattcacaccagtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgctttggtttagg 28091721  T
Q  352 ctttag 357  Q
    ||||||    
T  28091722 ctttag 28091727  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 395
Target Start/End: Original strand, 9743008 - 9743134
Alignment:
Q  269 tcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagattgattctct 368  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||| | ||  ||||||    
T  9743008 tcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagtatataaaacatgatgtgtatgcattggtttaggctttcgttttgttctct 9743107  T
Q  369 tttgctttaattctttatgcttgtgtc 395  Q
     |||||||  |||||| || |||||||    
T  9743108 attgctttgcttctttgtgtttgtgtc 9743134  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 13528654 - 13528756
Alignment:
Q  250 attgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggttta 349  Q
    ||||||||||||||||| ||   |||||||||||||| |||| |  ||||| |||||  |||||||||||||||||||||||    ||||||||||||||    
T  13528654 attgcagagtcctagaggataa-aaaatgagtgcatttaaacccatgctaatagtggattatctaaagcttataaatcatga----tatgccttggttta 13528748  T
Q  350 ggctttag 357  Q
    ||||||||    
T  13528749 ggctttag 13528756  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 17350775 - 17350691
Alignment:
Q  272 gaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggcttta 356  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17350775 gaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggcttta 17350691  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 5180329 - 5180224
Alignment:
Q  252 tgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagg 351  Q
    |||||||||||| |  ||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||    
T  5180329 tgcagagtcctaaaagatcggaaaatgagtgcattcacacccgtgctaagagtggcatatttaaagcttataaatcatgatttgtatgcattgatttagg 5180230  T
Q  352 ctttag 357  Q
    ||||||    
T  5180229 ctttag 5180224  T

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