View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3610_low_1 (Length: 518)
Name: NF3610_low_1
Description: NF3610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3610_low_1 |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 46647193 - 46647697
Alignment:
| Q |
1 |
gctaaacagaacaaaattggaaccatagatttgatgttggtggtgatgggttacatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647193 |
gctaaacagaacaaaattggaaccatagatttgatgttggtggtggtgggttacatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataat |
46647292 |
T |
|
| Q |
101 |
aatatggtgttgagagactatgataaatgtgtgtttttaatttgatttagtggtcaaaagctcagccttgagaacctggatattcttctttcacaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647293 |
aatatggtgttgagagactatgataaatgtgtgtttttaatttgatttagtggtcaaaagctcagccttgagaacctggatattcttctttcacaatgtt |
46647392 |
T |
|
| Q |
201 |
tcattggaacgtaagtaagtgttcaaatcagtgacactcttagatatcaacaatgataatcttggtaaatatcttgttcctcttattcatgtggatcgtg |
300 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647393 |
tcattgaaacgtaagtaagtgttcagatcagtgacactcttagatctcaacaatgataatcttggtaaatatcttgttcctcttattcatgtggatcgtg |
46647492 |
T |
|
| Q |
301 |
gaatatttagtgaggttcttaataaaaagatacatagtcatctcaacgctttgaaaagtaaacattcat--nnnnnnnnnnnnnnnntatgtannnnnnn |
398 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
46647493 |
gaacatttcgtgaggttcttaataaaaagatacatagtcatctcaacgctttgaaaagtaagcattcataaaataaaataaaaaaaatatgtattttttt |
46647592 |
T |
|
| Q |
399 |
aaaggctaagaaaaataattaataaaccaactaaagtccctgtagcacatgatgtatacgagaaacgtaacaatccgaaatgttacaacgaaccaggaga |
498 |
Q |
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| T |
46647593 |
aaaggctaagaaaaataattaataaaccaactaaagtccctatagcacatgatgtatacgagaaacttaacaatccgaaatgttacaacgaaccaggaga |
46647692 |
T |
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| Q |
499 |
aaaat |
503 |
Q |
| |
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||||| |
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| T |
46647693 |
aaaat |
46647697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 9122814 - 9122708
Alignment:
| Q |
18 |
tggaaccatagatttgatgttggtggtgatgg-gttacatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttgagag |
116 |
Q |
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|||||| |||| ||||||| || ||||| ||| || |||||||||||||||| |||||||| || ||| ||||||| ||||||| | |||||||| | |
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| T |
9122814 |
tggaacaataggtttgatgatgttggtggtggtgtggcatgaaggagaaagaa-tagtgttggaagatggtgtggaagaataata---tagtgttgaggg |
9122719 |
T |
|
| Q |
117 |
actatgataaa |
127 |
Q |
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||||||||||| |
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| T |
9122718 |
actatgataaa |
9122708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 55514648 - 55514548
Alignment:
| Q |
54 |
catgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttgagagactatgataaatgtgtgtttttaatttgatttagtgg |
153 |
Q |
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|||||||||||||| | |||||||| || ||| ||||||| |||||||||||| ||||||||||| ||||||||||| | || |||||||||||||| |
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| T |
55514648 |
catgaaggagaaagga-tagtgttggaagatggtgtggaa----aataatatggtgatgagagactataataaatgtgtgctctttatttgatttagtgg |
55514554 |
T |
|
| Q |
154 |
tcaaaa |
159 |
Q |
| |
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| |||| |
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|
| T |
55514553 |
ttaaaa |
55514548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 26393919 - 26393953
Alignment:
| Q |
98 |
aataatatggtgttgagagactatgataaatgtgt |
132 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
26393919 |
aataatatggtgctgagagactatgataaatgtgt |
26393953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 13361757 - 13361679
Alignment:
| Q |
53 |
acatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttgagagactatgataaatgtgtgtt |
135 |
Q |
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| T |
13361757 |
acatgaaggagaaagaa-tagtgttgaaagatggtgtagaagaataata---tagtgttgagagaccatgataaatgtgtgtt |
13361679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 21853437 - 21853473
Alignment:
| Q |
98 |
aataatatggtgttgagagactatgataaatgtgtgt |
134 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
21853437 |
aataatatggtgctgagagactatgataaatgtgtgt |
21853473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 15846 - 15880
Alignment:
| Q |
98 |
aataatatggtgttgagagactatgataaatgtgt |
132 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
15846 |
aataatatggtgctgagagactatgataaatgtgt |
15880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 20994808 - 20994883
Alignment:
| Q |
399 |
aaaggctaagaaaaata-attaataaaccaactaaagtccctgtagcacatgatgtatacgagaaacgtaacaatcc |
474 |
Q |
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| T |
20994808 |
aaaggctaagaaaaatatattaataaaccaac-aaaacccctctagcacaagatgtataagaggaacttaactatcc |
20994883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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