View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3610_low_2 (Length: 403)

Name: NF3610_low_2
Description: NF3610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3610_low_2
NF3610_low_2
[»] chr2 (3 HSPs)
chr2 (218-400)||(4571054-4571236)
chr2 (218-357)||(9746779-9746918)
chr2 (247-344)||(36770167-36770264)
[»] chr1 (1 HSPs)
chr1 (261-395)||(24622902-24623036)
[»] chr8 (1 HSPs)
chr8 (268-357)||(9264527-9264616)
[»] chr4 (6 HSPs)
chr4 (268-357)||(33471674-33471763)
chr4 (218-357)||(44775560-44775699)
chr4 (1-213)||(31026796-31027015)
chr4 (80-213)||(31031800-31031936)
chr4 (1-93)||(31016875-31016967)
chr4 (2-43)||(31031934-31031975)
[»] chr3 (4 HSPs)
chr3 (268-357)||(11776130-11776219)
chr3 (252-357)||(28091622-28091727)
chr3 (269-395)||(9743008-9743134)
chr3 (250-357)||(13528654-13528756)
[»] chr6 (1 HSPs)
chr6 (272-356)||(17350691-17350775)
[»] chr5 (1 HSPs)
chr5 (252-357)||(5180224-5180329)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 218 - 400
Target Start/End: Complemental strand, 4571236 - 4571054
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4571236 tatgtttcaaatagacagaagaaaaaaaacaaattgcagagtcctagagaatcgaaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 4571137  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttagattgattctcttttgctttaattctttatgcttgtgtcttctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4571136 cttataaatcatgatgtgtatgccttggtttaggctttagattgattctctgttgctttaattctttgtgcttgtgtcttctt 4571054  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 9746779 - 9746918
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    ||||||||||||| |||||||        |||| ||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||| || ||||    
T  9746779 tatgtttcaaataaacagaagaagaaaaacaaactgcagagtcctagaggatcggaaaataagtgcattcacactcgtgctaagagtggcatttcaaaag 9746878  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    | |||||||||||||||||||| |||| | | ||||||||    
T  9746879 catataaatcatgatgtgtatggcttgatcttggctttag 9746918  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 36770167 - 36770264
Alignment:
Q  247 caaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttg 344  Q
    |||| ||||||||||||||| |||| ||||| |||||||||| ||||| |||||||||||||| || ||||| |||||| ||||||||||||| ||||    
T  36770167 caaactgcagagtcctagaggatcgaaaaataagtgcattcacactcgtgctaagagtggcatttcaaaagcctataaaacatgatgtgtatggcttg 36770264  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 24622902 - 24623036
Alignment:
Q  261 ctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagatt 360  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  24622902 ctagaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaaacatgatgtgtatgccttggtttaggctttagttt 24623001  T
Q  361 gattctcttttgctttaattctttatgcttgtgtc 395  Q
      |||||| |||||||  |||||| || |||||||    
T  24623002 tgttctctgttgctttgcttctttgtgtttgtgtc 24623036  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 9264527 - 9264616
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9264527 atcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagactttag 9264616  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 33471674 - 33471763
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33471674 atcggaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 33471763  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 44775560 - 44775699
Alignment:
Q  218 tatgtttcaaatagacagaagnnnnnnnncaaattgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaag 317  Q
    |||||||||||||||||||||        ||||||||| |||||||||| ||| |||| ||| ||||||||||| || ||||||| || ||||||||| |    
T  44775560 tatgtttcaaatagacagaagaaaaaaaacaaattgcaaagtcctagaggatcagaaattgattgcattcaaacccgtgctaagaatgacatatctaagg 44775659  T
Q  318 cttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44775660 cttataaatcatgatgtgtatgccttggtttaggctttag 44775699  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 31027015 - 31026796
Alignment:
Q  1 aactcaacaatgatgcaccacaggaattcgtttgctcggaagcacaaggttttggcaactgaagattaggtacgaccacagccacatccacattc----- 95  Q
    ||||||||| ||||||||||||| ||| ||||||| | ||||| |||| ||||||||| |||||||||| | | |||||| ||| |||||   ||         
T  31027015 aactcaacagtgatgcaccacagaaatccgtttgcacagaagcgcaagtttttggcaattgaagattagtttctaccacaaccatatccattatccgcga 31026916  T
Q  96 --attcagttgattaatctgatcataagctgtaatgactggatttcagctgcacttccattcaactttgaaactacaactagcttttcatttagtggcac 193  Q
      |||||  |||||||   ||||||||||||||  || |  |||||||||||||||||| |||||||||||| |||||| || ||| ||||  |||| ||    
T  31026915 tgattcatctgattaaatagatcataagctgtagcgatttcatttcagctgcacttccaatcaactttgaaattacaacaaggtttgcattaggtggtac 31026816  T
Q  194 tggtcgacaatggttggaat 213  Q
    ||||| ||||||||||||||    
T  31026815 tggtcaacaatggttggaat 31026796  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 31031936 - 31031800
Alignment:
Q  80 agccacatccacattcattcagttgattaatctgatcataagctgtaatgactggatttcagctgcacttccattcaactttgaaactacaactagcttt 179  Q
    ||||||||||||| | |||||  |||||||   ||||||||||||||   |||| |||||||||| ||||||||||||||||||||||||| | || |||    
T  31031936 agccacatccacaatgattcatctgattaaatagatcataagctgtagcaactgcatttcagctggacttccattcaactttgaaactacagcaaggttt 31031837  T
Q  180 tcatttagtggcac---tggtcgacaatggttggaat 213  Q
     ||||| |||| ||   ||||| ||||||||||||||    
T  31031836 gcatttggtggtactggtggtcaacaatggttggaat 31031800  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31016967 - 31016875
Alignment:
Q  1 aactcaacaatgatgcaccacaggaattcgtttgctcggaagcacaaggttttggcaactgaagattaggtacgaccacagccacatccacat 93  Q
    ||||||||||||||||||||||| ||||| | | | |  |||| |||| ||||||||| |||||||||||||| |||||||||||| ||||||    
T  31016967 aactcaacaatgatgcaccacagaaattcatcttcacaaaagcgcaagtttttggcaattgaagattaggtactaccacagccacagccacat 31016875  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 31031975 - 31031934
Alignment:
Q  2 actcaacaatgatgcaccacaggaattcgtttgctcggaagc 43  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  31031975 actcaacaatgatgcaccacaggaattcgtttgctaggaagc 31031934  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 11776130 - 11776219
Alignment:
Q  268 atcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttag 357  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11776130 atcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgtcttggtttaggctttag 11776219  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 28091622 - 28091727
Alignment:
Q  252 tgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagg 351  Q
    |||||||||||| || |||| |||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28091622 tgcagagtcctaaaggatcgaaaaatgagtgcattcacaccagtgctaagagtggcatatctaaagcttataaatcatgatgtgtatgctttggtttagg 28091721  T
Q  352 ctttag 357  Q
    ||||||    
T  28091722 ctttag 28091727  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 395
Target Start/End: Original strand, 9743008 - 9743134
Alignment:
Q  269 tcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagattgattctct 368  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||| | ||  ||||||    
T  9743008 tcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagtatataaaacatgatgtgtatgcattggtttaggctttcgttttgttctct 9743107  T
Q  369 tttgctttaattctttatgcttgtgtc 395  Q
     |||||||  |||||| || |||||||    
T  9743108 attgctttgcttctttgtgtttgtgtc 9743134  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 13528654 - 13528756
Alignment:
Q  250 attgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggttta 349  Q
    ||||||||||||||||| ||   |||||||||||||| |||| |  ||||| |||||  |||||||||||||||||||||||    ||||||||||||||    
T  13528654 attgcagagtcctagaggataa-aaaatgagtgcatttaaacccatgctaatagtggattatctaaagcttataaatcatga----tatgccttggttta 13528748  T
Q  350 ggctttag 357  Q
    ||||||||    
T  13528749 ggctttag 13528756  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 17350775 - 17350691
Alignment:
Q  272 gaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggcttta 356  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17350775 gaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggcttta 17350691  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 5180329 - 5180224
Alignment:
Q  252 tgcagagtcctagagaatcggaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagg 351  Q
    |||||||||||| |  ||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||    
T  5180329 tgcagagtcctaaaagatcggaaaatgagtgcattcacacccgtgctaagagtggcatatttaaagcttataaatcatgatttgtatgcattgatttagg 5180230  T
Q  352 ctttag 357  Q
    ||||||    
T  5180229 ctttag 5180224  T

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