View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_high_10 (Length: 311)
Name: NF3611_high_10
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 34610199 - 34610486
Alignment:
| Q |
18 |
gaaggatcataggtggcaaacctgcatgtatttatctatatatatgtctatgtaatcctccggaatgaaatattagcnnnnnnnn--gagtccgaaagtc |
115 |
Q |
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| T |
34610199 |
gaaggatcataggtggcaaacctgcatgtatttatctatatatatgtctatgtaatcctccggaatgaaatattagcaaaaaaaaaagagtccgatagtc |
34610298 |
T |
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| Q |
116 |
ggatgtttttagttgaaattttggaccggatacatttgaatttttaaatctttttgcttacatctcttttagagagtattagttaggtttcgtacaaatg |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34610299 |
ggatgtgtttagttgaaattttggaccggatacatttgaatttttaaatctttttgcttacatctcttttagagagtattagttaggtttcgtacaaatg |
34610398 |
T |
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| Q |
216 |
aatattaatcttaccatgttttaatgatatcaactagtttgatccaaatattgtttaggatatat--ttacgacgtaatttgattcat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
34610399 |
aatattaatcttaccatgttttaatgatatcaactagtttgatccaaatattgtttaggatatataattatgacgtaatttgattcat |
34610486 |
T |
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