View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_high_14 (Length: 251)
Name: NF3611_high_14
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 45659279 - 45659028
Alignment:
| Q |
1 |
aagtgcatcactccataaaaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaaca |
100 |
Q |
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| T |
45659279 |
aagtgcatcactccataaaaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaaca |
45659180 |
T |
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| Q |
101 |
tattttgcatc-aaattcaaatcagcaaaaaacagaaccaacaaagagtttttgtttatacttcagcttacatcaaataaacatagaagcccgaaataca |
199 |
Q |
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| T |
45659179 |
tagtttgcatcaaaattcaaatcagcaaaaaacagaaccaacaaagagtttttgtttatacttcagcttaccaaaaataaacatagaagccctaaatcca |
45659080 |
T |
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| Q |
200 |
cctttctttctatctcattcagtgctacgcatgagtgattcagtttcctctt |
251 |
Q |
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||||||||||| | ||||||||| | || ||||| |||||||||||||| |
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| T |
45659079 |
cctttctttctcttccattcagtgagaagcttgagttcttcagtttcctctt |
45659028 |
T |
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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37984262 - 37984345
Alignment:
| Q |
1 |
aagtgcatcactccataaaaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactaca |
84 |
Q |
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||||||||||||||| ||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
37984262 |
aagtgcatcactccaataaagtatagtactaagctcaccatgtttgtcacaaaacccatgttatccaatgctgacaaaactaca |
37984345 |
T |
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