View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3611_high_15 (Length: 250)
Name: NF3611_high_15
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_high_15 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10939113 - 10939351
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10939113 |
ttttcgagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgttaaattcacaaatattgactaagacgtctctaagtc |
10939212 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
10939213 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtcgttgtctattaagagacaacatgttcatcaata |
10939312 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10939313 |
agataaatctacttatagatttattctcattggattcat |
10939351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10944975 - 10945213
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10944975 |
ttttcgagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgttaaattcacaaatattgactaagacgtctctaagtc |
10945074 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
10945075 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtcgttgtctattaagagacaacatgttcatcaata |
10945174 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10945175 |
agataaatctacttatagatttattcttattggattcat |
10945213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 73454 - 73695
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||||| ||||||||||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
73454 |
ttttctagtggcaaagtatcatttccctaaatttctttccaaggggttttatacacgaatccgctaaattcacagatattgactaagacgtctctaagtc |
73553 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagt--ctt--tgtctattaagcgacaacatgttcatc |
196 |
Q |
| |
|
|||| ||||| ||||||||||||| ||| | |||||||| |||||||| | |||| | | ||| | ||| || ||| ||| ||||| | | |||||| |
|
|
| T |
73554 |
aatt-acctcttatttcatcaagtctataataataaacttggattacacactaaatttacacagcttgcttagtggctactaaacgacatcttattcatc |
73652 |
T |
|
| Q |
197 |
attaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73653 |
cacaagataaatctacttatagatttattctcattggattcat |
73695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 18737143 - 18737213
Alignment:
| Q |
169 |
ttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
18737143 |
ttgtctactaaacgacaacatattcatcaataagataaatttacttataaatttattctcattggattcat |
18737213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 8365592 - 8365531
Alignment:
| Q |
177 |
taagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattca |
238 |
Q |
| |
|
||||||| | ||| ||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8365592 |
taagcgaaatcatattcatcaatgagataaatctacttatagatttattctcattggattca |
8365531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 18737044 - 18737082
Alignment:
| Q |
75 |
aatattgactaagacgtctctaagtcaattaacctcata |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
18737044 |
aatattgactaagacgtctctcagtcaattaatctcata |
18737082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 9808997 - 9808944
Alignment:
| Q |
186 |
acatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
9808997 |
acatattcaacaataagataaatctacttatagattcattcgtattggattcat |
9808944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 49388599 - 49388837
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
49388599 |
ttttcgagtggcagagtctcattttcctaaatttcttcccaaggggttttatatatggatccgctagattcacaaatattgactaagacgtttctaagtc |
49388698 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
49388699 |
aattaacctcatattttatcaagtttatgaaaataaactcggattacataataaactaatacaagtcgttgtctattaagcgacaacatgttcatcaata |
49388798 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49388799 |
agataaatctacttatagatttattctcattggattcat |
49388837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 1967838 - 1967615
Alignment:
| Q |
16 |
gtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatatt |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1967838 |
gtctcatttccctaaatttcttcccaaggggttttatatacggatccgctaaattcacaaatattgactaagacgtctctaagtcaattaacctcatatt |
1967739 |
T |
|
| Q |
116 |
tcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcattaagataaatctactta |
215 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
1967738 |
tcatcaagtttatgaaagtaaacttggattacacaataaactaatagaagtcgttgtctactaagcgacaacatgttcattaataaaataaatctactta |
1967639 |
T |
|
| Q |
216 |
tagatttattctcattggattcat |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1967638 |
tagatttattctcattggattcat |
1967615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 38826536 - 38826754
Alignment:
| Q |
23 |
tttcctaaatttcttcccaaggggttttata--tacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatatttcatc |
120 |
Q |
| |
|
||||| |||||||||||||| |||| |||| ||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38826536 |
tttcccaaatttcttcccaataggttgtatatatacggatccacttaattcacaaatattgaccaagacgtctctaagtcaattaacctcatatttcatc |
38826635 |
T |
|
| Q |
121 |
aagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcattaagataaatctacttatagat |
220 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||||||||| ||||||| ||| ||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
38826636 |
aagtttataaaaataaactcgaattacacaataaactaatacaagtcattgtctactaaatgacaatatgttcatcaataagataaatctacctatagat |
38826735 |
T |
|
| Q |
221 |
ttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38826736 |
ttattctcattggattcat |
38826754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24172125 - 24171880
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaagggg-ttttatatacggatccgctagattcataaatattgactaagacgtctctaagt |
99 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24172125 |
ttttctagtggcgtagtctcatttccctaaattttctcccaagaggattttatatacggatccgctaaattcataaatattgactaagacgtctctaagt |
24172026 |
T |
|
| Q |
100 |
caattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgtctattaagcgacaacatgttc |
193 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||| | ||| |||||| |||| || ||||||||||| | || |
|
|
| T |
24172025 |
caattaacctcatatttcatcaagtctataaaaataaacttggattacatgataaatttatataagtctgcttagttgtttactaagcgacaacttagtc |
24171926 |
T |
|
| Q |
194 |
atcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
24171925 |
atcaataagataaatctacttgtaaatttattctcattgaattcat |
24171880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 49874294 - 49874326
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
49874294 |
attgactaagacgtctctaagtcaatcaacctc |
49874326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13818163 - 13817925
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
13818163 |
ttttcgagtggcagagtctcattttcctaaatttcttcccaaggggttttctacacggatccgctaaattcacaaatattgactaagacgtctctaagtc |
13818064 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
13818063 |
aattaacctcatatttcatcaagtttatgaaaataaactcgaattacataataaactaatacaagtcgttgtctattaagcgacaacatgttcatcaata |
13817964 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13817963 |
agataaatctacttatagatttattctcattggattcat |
13817925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 31207709 - 31207944
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| ||||||||| | |||| |||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
31207709 |
ttttctagtggcatggtctcatttccttaaaattcttcccaaggggttttatgtatggatccgcttaattcacaaatattgactaagacgtctctaagtc |
31207808 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||||||| ||||||||||||| ||| || |||||||||||||||| |||||| |||||||| || ||||||| ||| ||||| |||||||||| || |
|
|
| T |
31207809 |
aattaacctcgtatttcatcaagtctataaagataaactcggattacaaaataaattaatacaattcgttgtctactaaacgaca--atgttcatcaata |
31207906 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31207907 |
agataaatctacttat-gatttattctcattggattcat |
31207944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32353474 - 32353620
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
32353474 |
ttttctagtggcatagtctcatttccctaaatttcttcccagggggttttatatatggatccgcttaattcacaaatattgactaagacgtctctaagtc |
32353573 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattaca |
148 |
Q |
| |
|
|||| ||||| ||||||||||||| ||| | |||||||| |||||||| |
|
|
| T |
32353574 |
aatt-acctcttatttcatcaagtctataataataaacttggattaca |
32353620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24042642 - 24042880
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
24042642 |
ttttcgagtggcagaatctcattttcctaaatttcttcccaagggtttttatatacggatccgctaaattcacaaatattgactaagacgtctctaagtc |
24042741 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
24042742 |
aattaacctcgtatttcatcaagtttatgaaaataaacttggattacataataaactaatacaagtcgttgtctattaagcgacaacatgttcatcaata |
24042841 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24042842 |
agataaatctacttatagatttattctcattggattcat |
24042880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 6950828 - 6951051
Alignment:
| Q |
16 |
gtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatatt |
115 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6950828 |
gtctcatttccctaaatttcttcacaaggggttttatatacggatccacttaattcacaaaaattgactaagacgtctctaagtcaattaaactcatatt |
6950927 |
T |
|
| Q |
116 |
tcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcattaagataaatctactta |
215 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||| |||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6950928 |
tcatcaagtttataaaaacaaactcggatcacacaataaattaatacaagtcgttgtttattaagcgacaacatgttcatcaataagataaatctactta |
6951027 |
T |
|
| Q |
216 |
tagatttattctcattggattcat |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6951028 |
tagatttattctcattggattcat |
6951051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 19975191 - 19974973
Alignment:
| Q |
21 |
attttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatatttcatc |
120 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||| ||| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
19975191 |
atttccctaaatttcttcccaaggggatttatataaagatccactaaattcacaaatattgactaagacatctctaagtcaattaaactcatatttcatc |
19975092 |
T |
|
| Q |
121 |
aagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcattaagataaatctacttatagat |
220 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
19975091 |
aagtttataaaaataaactcagattacataataaactaatacaagtcgttgtctactaagcgacaacatattcatcaataagataaatctacttatagat |
19974992 |
T |
|
| Q |
221 |
ttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19974991 |
ttattctcattggattcat |
19974973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 15515836 - 15515766
Alignment:
| Q |
169 |
ttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| ||||||||||||| || |||| |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15515836 |
ttgtctactaagcgacaacatatttatcaataagataaatttacttataaatttattctcattggattcat |
15515766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 34234331 - 34234261
Alignment:
| Q |
169 |
ttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| |||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34234331 |
ttgtctactaagcgacgacatattcatcaacaagataaatctacttataaatttattctcattggattcat |
34234261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42254674 - 42254912
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
42254674 |
ttttcgagtggcaaagtctcatttccctaaatttcttcccaaggggttttatatacggatatgcttaattcacaaaaattgactaagacgtctctaagtc |
42254773 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
42254774 |
aattaaactcatatttcatcaagtttataaaaataaactcggatcacacaataaattaatacaagtcgttgtctattaagcgacaacatgttcatcaata |
42254873 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42254874 |
agataaaactacttatagatttattctcattggattcat |
42254912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19931235 - 19931473
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
19931235 |
ttttcgagtggtaaagtctcatttccctaaatttctttccaagggcttttatatacggatccgcttaattcacaaaaattgactaagacgtctctaagtc |
19931334 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
19931335 |
aattaaactcatatttcatcaagtttataatagtaaactcggatcacacaataaattaatacaagtcgttgtctattaagcgacaacatgttcatcaata |
19931434 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19931435 |
agataaatctacttataaatttattctcattggattcat |
19931473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14657093 - 14656851
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| || || |||||||||||||||| |||||||||| |
|
|
| T |
14657093 |
ttttcgagtggcaaagtctcatttccctaaatttcttcctaaggggttttatatacggatccgcttaatccacaaatattgactaagacatctctaagtc |
14656994 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagt---ctt--tgtctattaagcgacaacatgttcat |
195 |
Q |
| |
|
|| | ||||| ||||||||||| | ||| | |||||||| |||||||| | |||| | | |||||| ||| || ||| ||| ||||| | | ||||| |
|
|
| T |
14656993 |
aaat-acctcttatttcatcaaatctataataataaacttggattacacattaaatttacacaagtcggcttagtggctactaaacgacatcttattcat |
14656895 |
T |
|
| Q |
196 |
cattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14656894 |
cagcaagataaatctacttataaatttattctcattggattcat |
14656851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 16364265 - 16364335
Alignment:
| Q |
169 |
ttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| ||||||||||||| || |||| |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
16364265 |
ttgtctactaagcgacaacatatttatcaataagataaatttacttataaatttattctcattggattcat |
16364335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 11635409 - 11635471
Alignment:
| Q |
76 |
atattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaact |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| | ||||||||| | |||||||| |
|
|
| T |
11635409 |
atattgactaagacgtctctaagtcaatgaatatcatattt-accaagtttataacaataaact |
11635471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 16364166 - 16364207
Alignment:
| Q |
75 |
aatattgactaagacgtctctaagtcaattaacctcatattt |
116 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
16364166 |
aatattgactaagacatctctcagtcaattaatctcatattt |
16364207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17894163 - 17893925
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
17894163 |
ttttctagtggcatagtctcatttccctaaattttctcccaagggattttatatacggattcgctaaattcacaaatattgactaagacgtttctaagtc |
17894064 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtctttgtctattaagcgacaacatgttcatcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||| ||| ||||||||||||||||||||| || |
|
|
| T |
17894063 |
aattaacctcatatttcatcaagtttatataaataaactcggattacacaataaactaatacaaggcgttgcctactaagcgacaacatgttcatcaata |
17893964 |
T |
|
| Q |
201 |
agataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
17893963 |
aaataaatctacttataaatttattctcatttgattcat |
17893925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6668922 - 6669173
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagt- |
99 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| | |
|
|
| T |
6668922 |
ttttctagtggcaaagtctcattttcctaactttcttcccaaggggttttatatacggatccgcaaaattcacaatcattgactaagacgtctctaaatt |
6669021 |
T |
|
| Q |
100 |
--caat---taacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgtctattaagcgacaaca |
188 |
Q |
| |
|
|||| | ||||| ||||||||||||||||| ||||||||||||||||||| |||||| | ||||| |||| ||| ||| |||||||||| |
|
|
| T |
6669022 |
cacaatcaattacctcttatttcatcaagtttataaaaataaactcggattacacaataaatttatacacgtctacttggttggctaccaagcgacaact |
6669121 |
T |
|
| Q |
189 |
tgttcatcattaagataaatctacttataga-tttattctcattggattcat |
239 |
Q |
| |
|
||||||||| | |||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
6669122 |
tgttcatcaatgagataaatctacatatagattttattttcattggattcat |
6669173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 8990160 - 8990331
Alignment:
| Q |
68 |
attcataaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtc |
167 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
8990160 |
attcacaaatattgactaagacgtctctaagtcaattaatctcgtatttcatcaagtttataaaagtaaactcggattacacaataaactaatagcagtc |
8990259 |
T |
|
| Q |
168 |
tttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
|| ||| ||||||||||||| ||||| | ||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
8990260 |
gatgcctactaagcgacaacatattcattaataaaataaatttagctatagatttattctcattggattcat |
8990331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43291055 - 43290909
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| |||||| ||| ||||||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||| |||||||||| |
|
|
| T |
43291055 |
ttttctagtggcatagtctcgtttccctaaatttcttctcatggggttttatatacggatccacttaattcacaaatattgactaagacatctctaagtc |
43290956 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattaca |
148 |
Q |
| |
|
|||| ||||| ||||||||||||| ||| | |||||||| |||||||| |
|
|
| T |
43290955 |
aatt-acctcttatttcatcaagtctataataataaacttggattaca |
43290909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 6805720 - 6805648
Alignment:
| Q |
68 |
attcataaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaactc |
140 |
Q |
| |
|
||||| |||||||||||||| ||||||| | |||||||| |||||||||| || ||| ||| ||||||||||| |
|
|
| T |
6805720 |
attcacaaatattgactaagccgtctcttaatcaattaatctcatatttcgtcgagtatataaaaataaactc |
6805648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 6661540 - 6661576
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctcatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6661540 |
attgactaagacgtctctaagtcaatcaacctcatat |
6661576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 572852 - 572888
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctcatat |
114 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
572852 |
attgactaagacatctctaagtcaatcaacctcatat |
572888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 38641797 - 38642025
Alignment:
| Q |
16 |
gtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatatt |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38641797 |
gtctcatttccctaaatttcttcccaaggggttttatatacggatccgctaaattcacatatattgactaagacgtctctaagtcaattaacctcatatt |
38641896 |
T |
|
| Q |
116 |
tcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgtctattaagcgacaacatgttcatcattaagataaatc |
209 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | |||||| ||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
38641897 |
tcatcaagtctataaaaataaactcggattaaacaataaataaatacaagtctgcttagttgtctactaagcgacaacatattcatcaataagataaatc |
38641996 |
T |
|
| Q |
210 |
tacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||| ||| ||||||| || |||||||| |
|
|
| T |
38641997 |
tacttgcaga-ttattcttatcggattcat |
38642025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 43656855 - 43656696
Alignment:
| Q |
68 |
attcataaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtc |
167 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||| ||||||||||||| ||| || |||||||||||||||| || ||||| | ||||||||| |
|
|
| T |
43656855 |
attcacaaatattgactaagatgtctcttaatcaattaatctcatatttcatcgagtcta--aaaataaactcggatttcactataaatttatacaagtc |
43656758 |
T |
|
| Q |
168 |
tttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggatt |
236 |
Q |
| |
|
| ||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43656757 |
ta---cta----gcgaaaacatattcatcaacaagataaatctacttatagatttattctcattggatt |
43656696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31182632 - 31182562
Alignment:
| Q |
169 |
ttgtctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattggattcat |
239 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31182632 |
ttgtctactaagcgacaacatattcatcaataagataaatctacttattgatttattctcattggattcat |
31182562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 38677529 - 38677371
Alignment:
| Q |
79 |
ttgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgt |
172 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| | |||||| | | ||||||| | | ||||||||| | ||||| |||| |||| |
|
|
| T |
38677529 |
ttgactaagacgtctctcagtcaattaatctcatattt-accaagttaacaattataaacttgttcttcataataaattcatacaggtctgcttagttgt |
38677431 |
T |
|
| Q |
173 |
ctattaagcgacaacatgttcatcattaagataaatctacttatagatttattctcattg |
232 |
Q |
| |
|
||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38677430 |
ctaccaagcaacaacatactcatcaataagataaatctacttatagatttattctcattg |
38677371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 9032358 - 9032295
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctcatat-ttcatc-aagtttatgaaaataaact |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| |||||||| | |||||||| |
|
|
| T |
9032358 |
attgactaagacgtctctaagtcaatcaacctcatatattcatcaaagtttataacaataaact |
9032295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 21256974 - 21257010
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctcatat |
114 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
21256974 |
attgactaatacgtctctaagtcaatcaacctcatat |
21257010 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 29278052 - 29278020
Alignment:
| Q |
78 |
attgactaagacgtctctaagtcaattaacctc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29278052 |
attgactaagacgtctctaagtcaatcaacctc |
29278020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 126769 - 126550
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| | |||||||||| |
|
|
| T |
126769 |
ttttctagtggtatagtctcgtttccctaaatttcttcccaaggggttttatatacggatccgctaaattcacatatattgactaaggcttctctaagtc |
126670 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgtctattaagcgacaacatgttca |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
126669 |
aattaacctcatatttcatcaagtctataaaaataaactcggattaaacaataaataaatacaagtctgcttagttgtctactaagcgacaacatattca |
126570 |
T |
|
| Q |
195 |
tcattaagataaatctactt |
214 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
126569 |
tcaataagataaatctactt |
126550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16086311 - 16086538
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtc |
100 |
Q |
| |
|
||||| ||||||| || ||||| | |||||| |||||||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
16086311 |
ttttctagtggcatagactcatatccctaaaattcttcccaatggattttatatacggatctgcttaattcacaaatattgactaagacgtctctaagtc |
16086410 |
T |
|
| Q |
101 |
aattaacctcatatttcatcaagtttatgaaaataaactcggattacataataaactaatacaagtct------ttgtctattaagcgacaacatgttca |
194 |
Q |
| |
|
||||| |||||||||||||||| | ||| |||||||||||| ||| || |||||| |||||||||||| ||| | | ||||||||||| | ||| |
|
|
| T |
16086411 |
aattatcctcatatttcatcaaatctataaaaataaactcgaatttcacaataaattaatacaagtctgcttagttgacaactaagcgacaacttagtca |
16086510 |
T |
|
| Q |
195 |
tcattaagataaatctacttatagattt |
222 |
Q |
| |
|
||| ||||||||||| ||| |||||||| |
|
|
| T |
16086511 |
tcaataagataaatcaactaatagattt |
16086538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31307700 - 31307636
Alignment:
| Q |
1 |
ttttcaagtggcagagtctcattttcctaaatttcttcccaaggggttttatatacggatccgct |
65 |
Q |
| |
|
||||| ||||||| |||||| ||| | ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31307700 |
ttttctagtggcatagtctcgtttccttaaatttcttcccaaggagttttatatacggatccgct |
31307636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 38467 - 38548
Alignment:
| Q |
32 |
tttcttcccaaggggttttatatacggatccgctagattcataaatattgactaagacgtctctaagtcaattaacctcatattt |
116 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| ||||| ||||||||| |||| ||||||| | |||||||| ||||||||| |
|
|
| T |
38467 |
tttcctccctaggggttttat---cggatccgctaaattcacaaatattgagtaaggcgtctcttaatcaattaatctcatattt |
38548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 201351 - 201291
Alignment:
| Q |
68 |
attcataaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttat |
128 |
Q |
| |
|
||||| ||||||| |||||||||||||| | |||||||| ||| |||||| |||||||||| |
|
|
| T |
201351 |
attcacaaatattaactaagacgtctcttaatcaattaatctcgtatttcgtcaagtttat |
201291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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