View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3611_high_16 (Length: 241)
Name: NF3611_high_16
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37869906 - 37869683
Alignment:
| Q |
1 |
aatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaaannnnnnnnggtggtcgaggtctgaacctcgaactttgtctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
37869906 |
aatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaagttttttttggtggttgagatctgaacctcgaactttgtctt |
37869807 |
T |
|
| Q |
101 |
tatcaactgagttaaacttacgagagnnnnnnnngtaacaagtttgtttaaaggtagttttcaccaaag-aaaaaataatataaaattacnnnnnnnnaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
37869806 |
tatcaactgagctaaacttacgagag-aaaaaaagtaacaagtttgtttaaaggtagttttcaccaaagaaaaaaataatataaaattacttttttttaa |
37869708 |
T |
|
| Q |
200 |
aggaccatgtaaaaggacttgatat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37869707 |
aggaccatgtaaaaggacttgatat |
37869683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University