View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_high_18 (Length: 229)
Name: NF3611_high_18
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 17799560 - 17799760
Alignment:
| Q |
12 |
cacagaaccaaacatacaaacagagaaagtaaccaaccaaccaattcaattccaataactttgtcactatcattcaccaacacaatgccccatcgtggtg |
111 |
Q |
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| T |
17799560 |
cacagaaccaaacatacaaacagagaaagtaaccaaccaaccaattcaattcccataactttgtcactaacattcaccaacacaatgccccatcgtggtg |
17799659 |
T |
|
| Q |
112 |
gcgcgtggaactcatcgccaccgttactcagcccaccacttctcattattctactccctatcctcgccttcacactcctcttcctcaccgtacctcctct |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
17799660 |
gcgcgtggaactcatcgccacccttactcagcccaccacttctcattattctactccctatcctagccttcaccctcctcttcctcaccgtacctcctct |
17799759 |
T |
|
| Q |
212 |
t |
212 |
Q |
| |
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| T |
17799760 |
t |
17799760 |
T |
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