View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_1 (Length: 896)
Name: NF3611_low_1
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 1157744 - 1158147
Alignment:
| Q |
19 |
acgtagtggggtgccataagaagtggattgccaacaatcctttgcaataagtggatacatgcattatgtccaactgcatccactgtgttcctagtgcccc |
118 |
Q |
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| T |
1157744 |
acgtagtggggtgccataagaagtggattgccaacaatcctttgcaataagtggatacatgcattatgtccaactgcatccactgtgttcctagtgcccc |
1157843 |
T |
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| Q |
119 |
aaaaggaagagacaacccacaaaatcatccattttaatttacattagattgtagattttgttacatttcctattttaaaaggttttactttagttgaaca |
218 |
Q |
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| T |
1157844 |
aaaaggaagagacaacccacaaaatcatccattttaatttacattagattgtagattttgttacatttccgattttaaaaggttttactttagttgaaca |
1157943 |
T |
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| Q |
219 |
cagcccctcaagttatacctaacatttagcacccaattctcgtggtagctaattcatcaatcaaattgtaaaaatggaagagattcatgaataagaatat |
318 |
Q |
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| T |
1157944 |
cagcccctcaagttatacctaacatttagcacccaattctcgtggtagctaattcatcaatcaaattgtaaaaatggaagagattcatgaataagaatat |
1158043 |
T |
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| Q |
319 |
gcctcttaaagatcctttgctaaatttagtttgtgcacactaggctagcacaaattgaaatgtcattgacaaacgaattgttaaaaaatttgtttaatct |
418 |
Q |
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| T |
1158044 |
gcctcttaaagatcctttgctaaatttagtttgtgcacactaggctagcacaaattgaaatgtcattgacaaaagaattgttaagaaacttgttcaatct |
1158143 |
T |
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| Q |
419 |
tgac |
422 |
Q |
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| T |
1158144 |
tgac |
1158147 |
T |
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