View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3611_low_11 (Length: 304)

Name: NF3611_low_11
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3611_low_11
NF3611_low_11
[»] chr1 (15 HSPs)
chr1 (17-293)||(28729885-28730165)
chr1 (180-279)||(5698510-5698609)
chr1 (180-279)||(5698128-5698228)
chr1 (180-279)||(14390424-14390524)
chr1 (188-279)||(27667677-27667769)
chr1 (201-279)||(3795982-3796061)
chr1 (187-281)||(4361064-4361159)
chr1 (180-290)||(42628215-42628326)
chr1 (187-279)||(31496612-31496705)
chr1 (180-268)||(39325514-39325603)
chr1 (197-279)||(35179822-35179905)
chr1 (229-279)||(23259087-23259137)
chr1 (180-279)||(9223842-9223942)
chr1 (187-266)||(18039988-18040068)
chr1 (180-279)||(31656371-31656471)
[»] chr5 (5 HSPs)
chr5 (180-279)||(3078538-3078638)
chr5 (180-279)||(1923949-1924049)
chr5 (201-289)||(11575614-11575703)
chr5 (180-255)||(20017303-20017379)
chr5 (180-279)||(13018996-13019096)
[»] chr7 (16 HSPs)
chr7 (180-279)||(35670351-35670451)
chr7 (180-279)||(37658112-37658212)
chr7 (180-285)||(31436244-31436350)
chr7 (229-279)||(44570934-44570984)
chr7 (213-289)||(30999374-30999451)
chr7 (188-287)||(3117305-3117405)
chr7 (180-279)||(9806586-9806686)
chr7 (180-279)||(30582673-30582773)
chr7 (180-287)||(31030761-31030869)
chr7 (180-279)||(40061165-40061265)
chr7 (201-287)||(36121425-36121512)
chr7 (229-279)||(21920843-21920893)
chr7 (221-266)||(42438145-42438190)
chr7 (180-279)||(31969463-31969563)
chr7 (180-279)||(34307117-34307217)
chr7 (201-284)||(43544914-43544998)
[»] chr4 (12 HSPs)
chr4 (180-279)||(19912675-19912775)
chr4 (201-288)||(20986267-20986355)
chr4 (180-279)||(30411249-30411349)
chr4 (180-279)||(55610665-55610765)
chr4 (211-253)||(373652-373694)
chr4 (229-279)||(19869962-19870012)
chr4 (180-279)||(1771837-1771937)
chr4 (200-279)||(55660548-55660628)
chr4 (180-279)||(202292-202392)
chr4 (229-285)||(30653338-30653394)
chr4 (180-279)||(45549655-45549755)
chr4 (229-277)||(55496084-55496132)
[»] chr3 (14 HSPs)
chr3 (180-287)||(32111557-32111665)
chr3 (180-285)||(40980137-40980243)
chr3 (180-279)||(40374505-40374605)
chr3 (180-262)||(32390111-32390194)
chr3 (237-281)||(25999224-25999268)
chr3 (197-284)||(50935710-50935798)
chr3 (201-279)||(34785896-34785975)
chr3 (197-279)||(50938251-50938334)
chr3 (229-279)||(48747406-48747456)
chr3 (180-288)||(36660133-36660242)
chr3 (197-277)||(36806926-36807007)
chr3 (188-284)||(42167337-42167434)
chr3 (201-284)||(43860723-43860807)
chr3 (180-279)||(46668343-46668443)
[»] scaffold0009 (1 HSPs)
scaffold0009 (201-281)||(94422-94503)
[»] chr8 (11 HSPs)
chr8 (180-288)||(18146335-18146444)
chr8 (180-288)||(45069816-45069925)
chr8 (180-279)||(12208808-12208908)
chr8 (180-279)||(12453236-12453336)
chr8 (188-279)||(43150254-43150346)
chr8 (180-279)||(4477616-4477716)
chr8 (188-279)||(43873960-43874052)
chr8 (229-287)||(35160317-35160375)
chr8 (194-267)||(41356304-41356378)
chr8 (202-279)||(53490-53567)
chr8 (201-284)||(38760828-38760912)
[»] chr6 (6 HSPs)
chr6 (180-279)||(1789789-1789889)
chr6 (180-279)||(18368731-18368831)
chr6 (187-279)||(6834050-6834143)
chr6 (180-288)||(18801693-18801802)
chr6 (180-287)||(190917-191025)
chr6 (180-279)||(4976526-4976626)
[»] chr2 (9 HSPs)
chr2 (188-282)||(15265346-15265441)
chr2 (201-279)||(18109733-18109812)
chr2 (180-279)||(1086045-1086145)
chr2 (180-279)||(39532064-39532164)
chr2 (211-279)||(10247411-10247480)
chr2 (229-290)||(45376900-45376961)
chr2 (229-277)||(6432174-6432222)
chr2 (180-279)||(26340031-26340131)
chr2 (180-279)||(40862201-40862300)
[»] scaffold1391 (1 HSPs)
scaffold1391 (187-279)||(1499-1592)
[»] scaffold0115 (2 HSPs)
scaffold0115 (180-279)||(4151-4251)
scaffold0115 (180-279)||(11891-11991)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 28730165 - 28729885
Alignment:
Q  17 tcacatagatcatagatgcaactcacacttctctctttcttcnnnnnnnnnnnnnnnngaggaaaatgattctcgacattgtttcatcatttttacatta 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||| |||||    
T  28730165 tcacatagatcatagatgcgactcacacttctctctttcttcaaaaataaaataaaaagaggaaaatgattctcgacattgtttcatcatttttgcatta 28730066  T
Q  117 aaaatta----gttatgatttttagatttcattaagctccttagaatagcatatggaaataagatatctagtgtgaaaaatttgttatcaaacacctctc 212  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||    
T  28730065 aaaattatgtagttatgatttttagatttcattaagctccttagaatagcatatggaaataagctatctagtgagaaaaacttgtttccaaacacctctc 28729966  T
Q  213 attttatcaaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataaccttagttcat 293  Q
    ||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28729965 attttgtcaaacacatttataaactagtttaataagctataagataacttatttgttttaccaaacataaccttagttcat 28729885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 5698609 - 5698510
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||| |||||  || ||||||||||| ||||||||||||||||| | ||||||| |||| ||| |||||||||| || ||| ||||| ||||||||||    
T  5698609 ctagtgagaaaagctttttatcaaacacatctcattttatcaaacaagcttataagttagtccaacaagctataagctagcttttttgtgttaccaaaca 5698510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 5698228 - 5698128
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||||||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  5698228 ctagtgagaaaagctttttatcaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 5698129  T
Q  279 a 279  Q
    |    
T  5698128 a 5698128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 14390524 - 14390424
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||| || ||| ||||||| | ||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  14390524 ctagtgagaaaaactttttaccaaacacatttcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 14390425  T
Q  279 a 279  Q
    |    
T  14390424 a 14390424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 27667769 - 27667677
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||| ||| ||| ||||||| ||||||||||||||| ||   ||||||||||||||||||||||||||  |||||  ||||| ||||||||||    
T  27667769 aaaagttttttaccaaacacatctcattttatcaaaacaaacttataagctagttcaataagctataaactaactattttgtgttaccaaaca 27667677  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 3795982 - 3796061
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| ||||||||||    
T  3795982 caaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaaca 3796061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 4361064 - 4361159
Alignment:
Q  187 gaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacata 281  Q
    ||||| ||| ||| ||||||| ||||||| ||| ||| || | |||||||||||| |||||| ||||||| |||||| ||||| ||||||||||||    
T  4361064 gaaaagttttttaccaaacacatctcattctattaaaacaagcttataagctagtccaataaactataagctaacttttttgtgttaccaaacata 4361159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 42628215 - 42628326
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||  || ||| ||||| |||||||||    
T  42628215 ctagtgagaaaagctttttaccaaacacatctcattttatcaaagcaagcttataagctagtccaacaagctataaactagcttttttgtattaccaaac 42628314  T
Q  279 ataaccttagtt 290  Q
    | | ||||||||    
T  42628315 agagccttagtt 42628326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 31496705 - 31496612
Alignment:
Q  187 gaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||| || ||| ||||||| ||||||| ||| ||| || |||||||||||||| ||| |||||||||| || ||||| ||| ||||||||||    
T  31496705 gaaaaactttttaccaaacacatctcattctattaaaacaagtttataagctagtccaagaagctataagctagcttatctgtgttaccaaaca 31496612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 39325514 - 39325603
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgt 268  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||||||| |||||||||| || ||| |||||    
T  39325514 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagctagttcaacaagctataagctagcttttttgt 39325603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 35179905 - 35179822
Alignment:
Q  197 ttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||||||| ||||||||||||||| ||   |||||||||||| ||| |||||||||| || ||| ||| | ||||||||||    
T  35179905 ttatcaaacacatctcattttatcaaaacaaacttataagctagtccaacaagctataagctagcttttttatgttaccaaaca 35179822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 23259137 - 23259087
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||||||||| ||| |||||||||| ||||||||| || ||||||||||    
T  23259137 ttataagctagtccaacaagctataagctaacttattcgtgttaccaaaca 23259087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 9223942 - 9223842
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||| |||||||| ||||| | ||||||| |||| ||| |||||||||| || ||| ||||| |||||||||    
T  9223942 ctagtgagaaaagctttttaccaaacacatcttattttatcaaaacaagcttataagttagtccaacaagctataagttagcttttttgtgttaccaaac 9223843  T
Q  279 a 279  Q
    |    
T  9223842 a 9223842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 18039988 - 18040068
Alignment:
Q  187 gaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttattt 266  Q
    ||||| ||| ||||||||||| ||||| |||||| ||||| ||||||||| || | ||| ||| |||||| ||||||||||    
T  18039988 gaaaagttttttatcaaacacatctcagtttatcaaaacaagtttataagttaatccaagaaggtataagctaacttattt 18040068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 31656471 - 31656371
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| |||||||||||| ||||| | || ||||||||| ||| |||||||||  || ||| ||||| |||||||||    
T  31656471 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttgtaagctagtccaacaagctataaactagcttttttgtgttaccaaac 31656372  T
Q  279 a 279  Q
    |    
T  31656371 a 31656371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 3078538 - 3078638
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||| || ||| ||||||| ||||||||||||||| || |||||||||||||| ||| ||| |||||| |||||| ||||| |||||||||    
T  3078538 ctagtgagaaaaactttttaccaaacacgtctcattttatcaaaacaagtttataagctagtccaacaagttataagctaacttttttgtgttaccaaac 3078637  T
Q  279 a 279  Q
    |    
T  3078638 a 3078638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 1924049 - 1923949
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  1924049 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaagcaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 1923950  T
Q  279 a 279  Q
    |    
T  1923949 a 1923949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 11575703 - 11575614
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataaccttagt 289  Q
    ||||||| ||||||| ||||||| ||   |||||||||||| ||| |||||||||| || ||| ||||| |||||||||| |||||||||    
T  11575703 caaacacatctcattctatcaaaacaaacttataagctagtccaacaagctataagctagcttttttgtgttaccaaacacaaccttagt 11575614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 20017303 - 20017379
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataag 255  Q
    |||||| |||||| || ||| ||||||| |||||||||||| ||||| | |||||||||||| ||| ||||||||||    
T  20017303 ctagtgagaaaaactttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataag 20017379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 13019096 - 13018996
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| ||   |||||||||||| ||| ||| |||||| || ||| ||||| |||||||||    
T  13019096 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaaacttataagctagtccaacaagttataagctagcttttttgtgttaccaaac 13018997  T
Q  279 a 279  Q
    |    
T  13018996 a 13018996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 35670351 - 35670451
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| ||||| ||| ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  35670351 ctagtgagaaaagttttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 35670450  T
Q  279 a 279  Q
    |    
T  35670451 a 35670451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 37658112 - 37658212
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  37658112 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 37658211  T
Q  279 a 279  Q
    |    
T  37658212 a 37658212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 285
Target Start/End: Original strand, 31436244 - 31436350
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||| || ||| ||||||| | |||||||||| ||||| ||||||||| |||| ||| |||||||||| || ||| ||||| |||| ||||    
T  31436244 ctagtgagaaaaactttttaccaaacacatttcattttatcaaaacaagtttataagttagtccaacaagctataagctagcttttttgtgttacgaaac 31436343  T
Q  279 ataacct 285  Q
    | |||||    
T  31436344 acaacct 31436350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 44570984 - 44570934
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||||||||| |||||||||||||| |||||| ||||| ||||||||||    
T  44570984 ttataagctagtccaataagctataagctaacttttttgtgttaccaaaca 44570934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 30999374 - 30999451
Alignment:
Q  213 attttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataaccttagt 289  Q
    ||||||||||| || | |||| ||||||| |||||||||||||  |||||||||||| |||||||||| ||| |||||    
T  30999374 attttatcaaaacaagcttatgagctagtccaataagctataaactaacttatttgtgttaccaaacacaactttagt 30999451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 3117305 - 3117405
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacctt 286  Q
    ||||| || ||||||||||| ||||||  |||| ||||| | |||||||||| |  ||||| ||||||| |||||||||| | |||||||||| ||||||    
T  3117305 aaaaactttttatcaaacacgtctcatcctatcaaaacaagcttataagctaatataataaactataagctaacttatttttgttaccaaacacaacctt 3117404  T
Q  287 a 287  Q
    |    
T  3117405 a 3117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 9806586 - 9806686
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||  |||||| ||| | |||||||||    
T  9806586 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataaactaacttttttatgttaccaaac 9806685  T
Q  279 a 279  Q
    |    
T  9806686 a 9806686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 30582773 - 30582673
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| | ||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  30582773 ctagtgagaaaagctttttaccaaacacatatcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 30582674  T
Q  279 a 279  Q
    |    
T  30582673 a 30582673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 31030761 - 31030869
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||| || ||| ||||||| ||| ||||||||||| || | |||||||||||| ||| || ||||||  || ||| ||| | |||||||||    
T  31030761 ctagtgagaaaaactttttaccaaacacatcttattttatcaaaacaagcttataagctagtccaacaaactataaattagcttttttatgttaccaaac 31030860  T
Q  279 ataacctta 287  Q
    |||||||||    
T  31030861 ataacctta 31030869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 40061265 - 40061165
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||| ||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  40061265 ctagtgagaaaagctttttaccaaacacatctcattttattaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 40061166  T
Q  279 a 279  Q
    |    
T  40061165 a 40061165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 36121512 - 36121425
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacctta 287  Q
    ||||||| ||| ||| ||||||| || | |||||||||| | |||||||||||||| || ||| ||||| |||||||||| |||||||    
T  36121512 caaacacatcttattctatcaaaacaagcttataagctaatccaataagctataagctatcttctttgtgttaccaaacacaacctta 36121425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 21920843 - 21920893
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||||||||| ||| |||||||||| || ||||||||| ||||||||||    
T  21920843 ttataagctagtccaacaagctataagctagcttatttgtgttaccaaaca 21920893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 42438190 - 42438145
Alignment:
Q  221 aaacacgtttataagctagttcaataagctataagataacttattt 266  Q
    ||||| ||||||||| ||||||||||||||||||  ||||||||||    
T  42438190 aaacaagtttataagttagttcaataagctataaactaacttattt 42438145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 31969463 - 31969563
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| | |||||||||| ||||| | ||||||| |||| ||| || ||||||| |||||| ||||| |||||||||    
T  31969463 ctagtgagaaaagctttttaccaaacacatttcattttatcaaaacaagcttataagttagtccaacaatctataagctaacttttttgtgttaccaaac 31969562  T
Q  279 a 279  Q
    |    
T  31969563 a 31969563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 34307217 - 34307117
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||||||||| ||| || |||||||| ||| |||||||| |||||  |||||||  |||| ||| || ||||||  |||||||||| | |||||||||    
T  34307217 ctagtgtgaaaagttttttttcaaacacatcttattttatcaaaacaaatttataaattagtacaacaaactataaactaacttatttatgttaccaaac 34307118  T
Q  279 a 279  Q
    |    
T  34307117 a 34307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 43544914 - 43544998
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacc 284  Q
    ||||||| ||| ||| ||||||| || | |||||||||||| ||| |||||||||| || |||||| || |||||||||| ||||    
T  43544914 caaacacatcttattatatcaaaacaagcttataagctagtccaacaagctataagttagcttattcgtgttaccaaacacaacc 43544998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 19912775 - 19912675
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||| || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  19912775 ctagtgagaaaaactttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 19912676  T
Q  279 a 279  Q
    |    
T  19912675 a 19912675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 20986355 - 20986267
Alignment:
Q  201 caaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataaccttag 288  Q
    ||||||| |||||||||||| ||||| ||||||||| |||| ||| |||||||||| || ||||||| | |||||||||| | ||||||    
T  20986355 caaacacatctcattttatcaaaacaagtttataagttagtccaacaagctataagttagcttatttatgttaccaaacacagccttag 20986267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 30411249 - 30411349
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  30411249 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 30411348  T
Q  279 a 279  Q
    |    
T  30411349 a 30411349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 55610765 - 55610665
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| ||||| ||| ||| ||||||| |||||||||||| ||||| | |||||||||||| ||| |||||||||| ||  || ||||| |||||||||    
T  55610765 ctagtgagaaaagttttttaccaaacacatctcattttatcaaaacaagcttataagctagtacaacaagctataagctagtttttttgtgttaccaaac 55610666  T
Q  279 a 279  Q
    |    
T  55610665 a 55610665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 373694 - 373652
Alignment:
Q  211 tcattttatcaaacacgtttataagctagttcaataagctata 253  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  373694 tcattttatcaaacaagtttataaactagttcaataagctata 373652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 19870012 - 19869962
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||||||||||||||||||||||| || |||||| || ||||||||||    
T  19870012 ttataagctagttcaataagctataagctagcttattcgtgttaccaaaca 19869962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 1771837 - 1771937
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| ||| |||||    
T  1771837 ctagtgagaaaagctttttaccaaacacatctcattttatcaaagcaagcttataagctagtccaacaagctataagctatcttttttgtgttatcaaac 1771936  T
Q  279 a 279  Q
    |    
T  1771937 a 1771937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 55660628 - 55660548
Alignment:
Q  200 tcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||| ||| |||||||| |||||| || |||||||||||||| ||| |||||||||| || ||||||| | ||||||||||    
T  55660628 tcaatcacatctcatttcatcaaaacaagtttataagctagtccaacaagctataagctagcttatttatgttaccaaaca 55660548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 202392 - 202292
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||| ||||||||||| || | |||||||||| | ||| |||||||||| || ||| ||||| |||||||||    
T  202392 ctagtgagaaaagctttttaccaaacacgtcttattttatcaaagcaagcttataagctaatccaacaagctataagctagcttttttgtgttaccaaac 202293  T
Q  279 a 279  Q
    |    
T  202292 a 202292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 30653338 - 30653394
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaacataacct 285  Q
    |||||||||||| ||| |||| ||||| |||||| ||||| |||||||||| |||||    
T  30653338 ttataagctagtccaacaagccataagctaacttttttgtgttaccaaacacaacct 30653394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 45549755 - 45549655
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| | ||||||||||||| || | |||||||||||  ||| |||||||||| || ||| ||||| |||||||||    
T  45549755 ctagtgagaaaagctttttaccaaacacatttcattttatcaaaacaagcttataagctagcccaacaagctataagctagcttttttgtgttaccaaac 45549656  T
Q  279 a 279  Q
    |    
T  45549655 a 45549655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 55496084 - 55496132
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaa 277  Q
    |||||||||||| ||| |||||||||| |||||| ||||| ||||||||    
T  55496084 ttataagctagtccaacaagctataagctaacttttttgtgttaccaaa 55496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 32111557 - 32111665
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  32111557 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 32111656  T
Q  279 ataacctta 287  Q
    | |||||||    
T  32111657 acaacctta 32111665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 285
Target Start/End: Original strand, 40980137 - 40980243
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || |||||||||||||||||| || ||||||| ||  || ||||| |||||||||    
T  40980137 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagtttataagctagttcaacaaactataagctagtttttttgtgttaccaaac 40980236  T
Q  279 ataacct 285  Q
    | |||||    
T  40980237 acaacct 40980243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 40374505 - 40374605
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  40374505 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagttagcttttttgtgttaccaaac 40374604  T
Q  279 a 279  Q
    |    
T  40374605 a 40374605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 32390111 - 32390194
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataactt 262  Q
    |||||| |||||| || ||| ||||||| |||||||||||| ||||| | |||||||||||| ||| |||||||||| ||||||    
T  32390111 ctagtgagaaaaactttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctaactt 32390194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 25999224 - 25999268
Alignment:
Q  237 tagttcaataagctataagataacttatttgttttaccaaacata 281  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||    
T  25999224 tagttcaataagctataagctaacttttttgtgttaccaaacata 25999268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 50935798 - 50935710
Alignment:
Q  197 ttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacc 284  Q
    ||||||||||| | | ||| ||||||| || | |||||||||||| |||||||||||||| || |||||| || |||||||||| ||||    
T  50935798 ttatcaaacacatattattatatcaaaacaagcttataagctagtccaataagctataagctagcttattcgtgttaccaaacacaacc 50935710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 34785896 - 34785975
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||| ||| ||| ||||||| || | |||||||||||| |||||||||||||| || ||||| ||| ||||||||||    
T  34785896 caaacacgtcttattctatcaaaacaagcttataagctagtccaataagctataagctagcttatgtgtgttaccaaaca 34785975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 50938251 - 50938334
Alignment:
Q  197 ttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||||||| ||| ||| ||| ||| || | |||||||||||| ||| |||||||||| ||||||||| || ||||||||||    
T  50938251 ttatcaaacacatcttattatataaaaacaaggttataagctagtccaacaagctataagctaacttattcgtgttaccaaaca 50938334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 48747456 - 48747406
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||||||||| |||||| ||||||| |||||| ||||| ||||||||||    
T  48747456 ttataagctagtccaataaactataagctaacttttttgtgttaccaaaca 48747406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 36660133 - 36660242
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||  ||||||||||||||| || | |||||||||| | ||| || ||||||| || ||| ||||| |||||||||    
T  36660133 ctagtgagaaaagctttttaccaaacaagtctcattttatcaaaacaagcttataagctaatccaacaaactataagctagcttttttgtgttaccaaac 36660232  T
Q  279 ataaccttag 288  Q
    ||| ||||||    
T  36660233 atagccttag 36660242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 36807007 - 36806926
Alignment:
Q  197 ttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaa 277  Q
    ||||||||||| |||||||||||| ||||| | |||||||||||| ||| |||||| ||  || ||| ||||| ||||||||    
T  36807007 ttatcaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctaaaaactagcttttttgtgttaccaaa 36806926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 42167337 - 42167434
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacc 284  Q
    ||||| || ||| ||||||| ||| ||| ||||||| || | |||||||||||| ||| |||||||||| || |||||| || |||||||||| ||||    
T  42167337 aaaaactttttaccaaacacatcttattatatcaaaacaagcttataagctagtccaacaagctataagctagcttattcgtgttaccaaacacaacc 42167434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 43860807 - 43860723
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacc 284  Q
    ||||||| ||| ||| ||||||| || | |||||||||||| ||| |||||||||| || |||||| || |||||||||| ||||    
T  43860807 caaacacatcttattatatcaaaacaagcttataagctagtccaacaagctataagctagcttattcgtattaccaaacacaacc 43860723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 46668443 - 46668343
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    ||||||||||||  || ||| ||||||| ||| |||||||| ||||| | ||||||| |||| ||| |||||||||| || ||| ||| | |||||||||    
T  46668443 ctagtgtgaaaagctttttaccaaacacatcttattttatcaaaacaagcttataagttagtccaacaagctataagctagcttttttatgttaccaaac 46668344  T
Q  279 a 279  Q
    |    
T  46668343 a 46668343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 94422 - 94503
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacata 281  Q
    ||||||| ||| ||| ||||||| || |||||||||||||||||| |||||||||| || |||||| || ||||||||||||    
T  94422 caaacacatcttattatatcaaaacaagtttataagctagttcaacaagctataagctagcttattcgtgttaccaaacata 94503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 18146444 - 18146335
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  18146444 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 18146345  T
Q  279 ataaccttag 288  Q
    | | ||||||    
T  18146344 acagccttag 18146335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 45069816 - 45069925
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  45069816 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 45069915  T
Q  279 ataaccttag 288  Q
    | | ||||||    
T  45069916 acacccttag 45069925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 12208908 - 12208808
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  12208908 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 12208809  T
Q  279 a 279  Q
    |    
T  12208808 a 12208808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 12453336 - 12453236
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  12453336 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 12453237  T
Q  279 a 279  Q
    |    
T  12453236 a 12453236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 43150346 - 43150254
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||| ||| ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| ||||||||||    
T  43150346 aaaagttttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaaca 43150254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 4477616 - 4477716
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||||||||||| | |||||||||| |||||   |||||| ||||| ||| |||||||||| |||||| ||||| |||||||||    
T  4477616 ctagtgagaaaagctttttatcaaacacatttcattttatcaaaacaaacttataatctagtccaacaagctataagctaacttttttgtgttaccaaac 4477715  T
Q  279 a 279  Q
    |    
T  4477716 a 4477716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 43874052 - 43873960
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||| ||| ||| ||||||| ||||||||||||||| || | |||||||||||||||| |||||||||  || ||| |||||  |||||||||    
T  43874052 aaaagttttttaccaaacacatctcattttatcaaaacaagcttataagctagttcaacaagctataaactagcttttttgtggtaccaaaca 43873960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 35160317 - 35160375
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaacataacctta 287  Q
    |||||||||| | |||||||||||||| || ||| ||||| |||||||||| |||||||    
T  35160317 ttataagctaatccaataagctataagctagcttttttgtgttaccaaacacaacctta 35160375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 41356378 - 41356304
Alignment:
Q  194 ttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttg 267  Q
    |||||| ||||||| |||||||||||| ||||| | |||||||||||| ||| |||||||| | |||||| ||||    
T  41356378 ttgttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctatatgctaacttttttg 41356304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 53490 - 53567
Alignment:
Q  202 aaacacctctcattttatcaaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    |||||| ||| |||||||||||||   ||||||| || ||||| |||||||||| || ||||||||| |||| |||||    
T  53490 aaacacatctaattttatcaaacaaacttataagttaattcaaaaagctataagctagcttatttgtgttacaaaaca 53567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 38760828 - 38760912
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataacc 284  Q
    ||||||| ||||||| ||||||| || | |||||||||||| ||| |||||||||  ||  |||||||| |||||||||| ||||    
T  38760828 caaacacatctcattctatcaaaacaagcttataagctagtccaacaagctataaactagtttatttgtattaccaaacacaacc 38760912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 1789889 - 1789789
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  1789889 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 1789790  T
Q  279 a 279  Q
    |    
T  1789789 a 1789789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 18368731 - 18368831
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  18368731 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 18368830  T
Q  279 a 279  Q
    |    
T  18368831 a 18368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 6834050 - 6834143
Alignment:
Q  187 gaaaaatttgttatcaaacacctctcatttt-atcaaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||| ||||||| ||||||| || | |||| ||| |||| | |||||||||||||||| || |||||||||| ||||||| | ||||||||||    
T  6834050 gaaaagtttgttaccaaacacatcacgttttcatccaacaagcttataagctagttcaacaaactataagatagcttatttatgttaccaaaca 6834143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 18801802 - 18801693
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| |||||||||||| ||||| | ||||||| |||| ||| |||||||||| || ||| ||||| |||||||||    
T  18801802 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagttagtccaacaagctataagctagcttttttgtgttaccaaac 18801703  T
Q  279 ataaccttag 288  Q
    | | ||||||    
T  18801702 acagccttag 18801693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 191025 - 190917
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| |||||||||||| ||||| | |||||| ||||| ||| |||||||||  |||||| ||||| ||| ||||     
T  191025 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataaactagtccaacaagctataaactaacttttttgtgttatcaaat 190926  T
Q  279 ataacctta 287  Q
    | |||||||    
T  190925 acaacctta 190917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 4976626 - 4976526
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| |||||||||||| ||||| | |||||||||||| ||| | |||||||| ||  || ||||| |||||||||    
T  4976626 ctagtgagaaaagctttttaccaaacacgtctcattttatcaaaacaagcttataagctagtccaacaggctataagctagtttttttgtgttaccaaac 4976527  T
Q  279 a 279  Q
    |    
T  4976526 a 4976526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 15265346 - 15265441
Alignment:
Q  188 aaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaacataa 282  Q
    ||||| || ||| ||||||| ||||||| ||| ||| || | |||||||||||  ||| |||||||||| |||||||||||| |||||||||||||    
T  15265346 aaaaagtttttaccaaacacgtctcattctattaaaacaagcttataagctagcccaagaagctataagctaacttatttgtgttaccaaacataa 15265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 18109733 - 18109812
Alignment:
Q  201 caaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||| |||||||||| || ||| ||||| ||||||||||    
T  18109733 caaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaaca 18109812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 1086145 - 1086045
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| ||||| |||  || ||||||| ||| |||||||| ||||| | ||||||| ||||| || |||||||||| || ||||||||| |||||||||    
T  1086145 ctagtgggaaaagttttataccaaacacatcttattttatcaaaacaagcttataagttagtttaacaagctataagctagcttatttgtgttaccaaac 1086046  T
Q  279 a 279  Q
    |    
T  1086045 a 1086045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 39532164 - 39532064
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||||||| ||   |||||||||||| ||| |||||||||| ||| || ||||| |||||||||    
T  39532164 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaaacttataagctagtccaacaagctataagctaatttttttgtgttaccaaac 39532065  T
Q  279 a 279  Q
    |    
T  39532064 a 39532064  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 10247411 - 10247480
Alignment:
Q  211 tcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||||||||||| || | |||||||||||| ||| || ||||||| |||||| ||||| ||||||||||    
T  10247411 tcattttatcaaaacaagcttataagctagtccaacaaactataagctaacttttttgtgttaccaaaca 10247480  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 45376961 - 45376900
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaacataaccttagtt 290  Q
    |||||||||||| ||| |||||||||  || ||||||||| |||||||||| | ||||||||    
T  45376961 ttataagctagtccaacaagctataaactagcttatttgtgttaccaaacacagccttagtt 45376900  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 6432222 - 6432174
Alignment:
Q  229 ttataagctagttcaataagctataagataacttatttgttttaccaaa 277  Q
    |||||||||||| ||| |||||||||| || ||||||||| ||||||||    
T  6432222 ttataagctagtccaacaagctataagctagcttatttgtgttaccaaa 6432174  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 26340031 - 26340131
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||  ||||||||||||||| || | |||||||||||| ||| ||| |||||| || ||| ||||| |||||||||    
T  26340031 ctagtgagaaaagctttttaccaaacatatctcattttatcaaaacaagcttataagctagtccaacaagttataagttagcttttttgtgttaccaaac 26340130  T
Q  279 a 279  Q
    |    
T  26340131 a 26340131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 40862201 - 40862300
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatc-aaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| |||||||||||| ||||| | |||||||||||| ||| |||||||||  || ||| ||||| |||||||||    
T  40862201 ctagtgagaaaagctttttaccaaacacatctcattttatcaaaacaagcttataagctagtccaacaagctataaactagctt-tttgtgttaccaaac 40862299  T

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Target: scaffold1391 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 1499 - 1592
Alignment:
Q  187 gaaaaatttgttatcaaacacctctcatttt-atcaaacacgtttataagctagttcaataagctataagataacttatttgttttaccaaaca 279  Q
    ||||| ||||||| ||||||| || | |||| ||| |||| | |||||||||||||||| || |||||||||| ||||||| | ||||||||||    
T  1499 gaaaagtttgttaccaaacacatcacgttttcatccaacaagcttataagctagttcaacaaactataagatagcttatttatgttaccaaaca 1592  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 4251 - 4151
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||| ||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  4251 ctagtgagaaaagctttttaccaaacacatctcattttattaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 4152  T
Q  279 a 279  Q
    |    
T  4151 a 4151  T

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Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 11991 - 11891
Alignment:
Q  180 ctagtgtgaaaaatttgttatcaaacacctctcattttatcaaa-cacgtttataagctagttcaataagctataagataacttatttgttttaccaaac 278  Q
    |||||| |||||  || ||| ||||||| ||||||||||| ||| || | |||||||||||| ||| |||||||||| || ||| ||||| |||||||||    
T  11991 ctagtgagaaaagctttttaccaaacacatctcattttattaaaacaagcttataagctagtccaacaagctataagctagcttttttgtgttaccaaac 11892  T
Q  279 a 279  Q
    |    
T  11891 a 11891  T

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