View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_13 (Length: 264)
Name: NF3611_low_13
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 1355447 - 1355680
Alignment:
| Q |
24 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtata |
123 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355447 |
agtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtata |
1355546 |
T |
|
| Q |
124 |
gggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355547 |
gggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgc |
1355646 |
T |
|
| Q |
224 |
aataaaaggttttattttagtttccttcatctca |
257 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
1355647 |
aataaaaggttttattttagtttccttcttctca |
1355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 1362333 - 1362465
Alignment:
| Q |
24 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtata |
123 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1362333 |
agtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctctttacaagtata |
1362432 |
T |
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| Q |
124 |
gggttccttccaattccaacaactaagtagact |
156 |
Q |
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| T |
1362433 |
ggaatccttccaattccaacaactaggtagact |
1362465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 11532305 - 11532409
Alignment:
| Q |
33 |
aacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttcctt |
132 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||| | |||||||| |||| || |
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| T |
11532305 |
aacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtatagagttcatt |
11532404 |
T |
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| Q |
133 |
ccaat |
137 |
Q |
| |
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||||| |
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| T |
11532405 |
ccaat |
11532409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 12846966 - 12847066
Alignment:
| Q |
29 |
caggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggtt |
128 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| | |||||||||||| |
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| T |
12846966 |
caggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggtt |
12847065 |
T |
|
| Q |
129 |
c |
129 |
Q |
| |
|
| |
|
|
| T |
12847066 |
c |
12847066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 29955013 - 29955088
Alignment:
| Q |
54 |
aaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||| | || | |||||||||||| | |||||||| |||| |
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| T |
29955013 |
aaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 51369465 - 51369360
Alignment:
| Q |
29 |
caggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggtt |
128 |
Q |
| |
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|||||| ||||| ||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| ||| |
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| T |
51369465 |
caggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagtt |
51369366 |
T |
|
| Q |
129 |
ccttcc |
134 |
Q |
| |
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| |||| |
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|
| T |
51369365 |
cattcc |
51369360 |
T |
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