View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_18 (Length: 237)
Name: NF3611_low_18
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 12672484 - 12672360
Alignment:
| Q |
40 |
ctcattgtaaatactattttcgggcactctat----gagtatgaatccaattatcatctttgattttattttttacagaattgtcctctctaatagaaat |
135 |
Q |
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| T |
12672484 |
ctcattgtaaataatattttcgggcactctatctatgagtatgaatccaattatcgtctttgattttattttttacacaattgtcctctctaatagaaat |
12672385 |
T |
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| Q |
136 |
aaataaatacaatatttactccttgatcc |
164 |
Q |
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| T |
12672384 |
a----aatacaatatttactccttgatcc |
12672360 |
T |
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