View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_2 (Length: 584)
Name: NF3611_low_2
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 15 - 567
Target Start/End: Original strand, 38574698 - 38575250
Alignment:
| Q |
15 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
114 |
Q |
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| T |
38574698 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
38574797 |
T |
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| Q |
115 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
214 |
Q |
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| T |
38574798 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
38574897 |
T |
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| Q |
215 |
gacactaccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
314 |
Q |
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| T |
38574898 |
gacactgccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
38574997 |
T |
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| Q |
315 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttgggttggtgatgcaag |
414 |
Q |
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| T |
38574998 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttgggttggtgatgcaag |
38575097 |
T |
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| Q |
415 |
gacttgggaacttgatgttggtggcctagcaagtagactttacttctatcaggtcaatcattcaattatcactctaatattggaaacttatgagtcatca |
514 |
Q |
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| T |
38575098 |
gacttgggaacttgatgttggtggcctagcaagtagactttacttctatcaggtcaatcattcaattatcactctaatattggaaacttatgagtcatca |
38575197 |
T |
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| Q |
515 |
cattacatcacatactcattcatttgtgtctctagcaaattcgtatttatgtt |
567 |
Q |
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| T |
38575198 |
cattacatcacatactcattcatttgtgtctcttgcaaattcgtatttatgtt |
38575250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30818043 - 30817996
Alignment:
| Q |
16 |
gagccaattctaccttctagacatgggaagttgttggaagaacaatgg |
63 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30818043 |
gagccaattctacctcatggacatgggaagttgttggaagaacaatgg |
30817996 |
T |
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