View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_20 (Length: 227)
Name: NF3611_low_20
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 34327350 - 34327158
Alignment:
| Q |
3 |
gaaaatctgaatttgatatgaacatataaataggaaacaaatttcttgccgtaacggtagactactataaagcatgtcaattgtctgatcaaaattgtac |
102 |
Q |
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| T |
34327350 |
gaaaatctgaatttgatatgaacatataaataggaaacaaatttcttgctttaacgggagactactataaagcatgtcaattgtctgatcaaaattgtac |
34327251 |
T |
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| Q |
103 |
ggtcaagataactttattaattaaaagatacaatttttaatcttaactgtacgatatcaaataaacagtcgagatctaaaactgcatgtaatt |
195 |
Q |
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| T |
34327250 |
ggttaagataactttattaattaaaagatacaatttttaatcttaactgtacgatatcaaataaacggtcgagatctaaaactatatgtaatt |
34327158 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 9563503 - 9563646
Alignment:
| Q |
70 |
taaagcatgtcaattgtctgatcaaaattgtacggtcaagataactttattaattaaaagatacaatttttaatcttaactgtacgatatcaaataaaca |
169 |
Q |
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||||||||||||| ||| |||||| |||||||| |||||| | |||||||| ||||||| |||||||||| ||||||| ||| |||||| ||| |
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| T |
9563503 |
taaagcatgtcaaccgtccaatcaaagttgtacggccaagatcattttattaa---aaagata--atttttaatcataactgttcgaactcaaatgaacg |
9563597 |
T |
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| Q |
170 |
gtcgagatctaaaactgcatgtaattgcatgcaattattacaacaccaa |
218 |
Q |
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| T |
9563598 |
gttaaaatctaaaactgcgtgtaacaacatgcaattattacagcaccaa |
9563646 |
T |
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