View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3611_low_21 (Length: 227)
Name: NF3611_low_21
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 38976309 - 38976111
Alignment:
| Q |
19 |
cataatacattaggaaaagtgcatcagggttatctttgggaagcttgttgatatagaggtaaaaacgcaacaaatcctctttagaaacggtttcggcatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38976309 |
cataatacattaggaaaagtgcatcagggttatctttgggaagcttgttgatatagaggtaaaaacgcaacaaatcctctttagaaactgtttcggcatc |
38976210 |
T |
|
| Q |
119 |
aacaacatcttcatcacaagttaatacccatagatcctccgaattaaccctccttaagctaccgcgacaaaaaggacacgactctgactctctgctcct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
38976209 |
aacaacatcttcatcacaagttaatacccatagatcctccgaattaaccctccttaagctaccgcgacaaaaaggacacgactctgactttctgttcct |
38976111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 34296778 - 34296966
Alignment:
| Q |
19 |
cataatacattaggaaaagtgcatcagggttatctttggg-aagcttgttgatatagaggtaaaaacgcaacaaatcctctttagaaacggtttcggcat |
117 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||| || ||||| ||||||||| ||||| || |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
34296778 |
cataatacattaagaaaagtgcatctgggtaatctttaggtaagct-gttgatataaaggtagaatcgcaacaagtcctcttttgaaactgtttcggcat |
34296876 |
T |
|
| Q |
118 |
caacaacatcttcatcacaagttaatacccatagatcctccgaattaaccctccttaagctaccgcgacaaaaaggacacgactctgact |
207 |
Q |
| |
|
|||| ||||| ||||||||||| | ||||||||||||||| |||||||| || |||| ||| ||||| ||||| ||||| |||||||||| |
|
|
| T |
34296877 |
caactacatcgtcatcacaagtgagtacccatagatcctcagaattaactcttcttatgctcccgcggcaaaatggacaagactctgact |
34296966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University