View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3611_low_4 (Length: 431)
Name: NF3611_low_4
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 24041740 - 24042156
Alignment:
| Q |
1 |
caaagaaagtagggtttctcgtaccgctcaatactcaccgtcaatggcggcgtggagagagtggagaggaacacggtgctgaaacgacgtcgttttttca |
100 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24041740 |
caaagaaattagggtttctcgtagctctcaatactcaccgtcaatggcgtcgtggagagagtggagaggaacacggtgctgaaacgacgtcgttttttca |
24041839 |
T |
|
| Q |
101 |
atgggcaacaactgtgtgggaccaaacctcggtaacaatggtggtttcctacaatccgtttccgcggccgtatggaaaacacgtccgccagaggcaaggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24041840 |
atgggcaacaactgtgtgggaccaaacctcggtaacaatggtggtttcctacaatccgtttccgcggccgtatggaaaacacgtccgccagaggcaaggc |
24041939 |
T |
|
| Q |
201 |
ttcctcctcctaatgccgaagatataaacaaaactccgacaacagcggaaaatgctgtaacagattcctcgaaaccagagtctagtgcaggtgggaaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
24041940 |
ttcctcctcctaatgccgaagataaaaacaaaactccgacaacaccggaaaatgctgtaacaggttcctcgaaaccggagtcttgtgctggtgggaaagt |
24042039 |
T |
|
| Q |
301 |
ttct------------gttcagagcacacctcctgaacaggtgaaaatagcagccgcagaaataaaaccgctcgaacatgaaaagccggtaaaagcagca |
388 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24042040 |
ttctgaacatgtttcggttcagagcacacctcctgaacaggtgaaaatagcagccgcagaaataaaaccgctcgaacatgaaaagccggtaaaagcagca |
24042139 |
T |
|
| Q |
389 |
gcatctagtgctgttgc |
405 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24042140 |
gcatctagtgctgttgc |
24042156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University